RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 AGPAT4Q9NRZ5 378 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 PHF3Q92576 2039 aaKnown RBP8.2□□□□□ -1.1
NIPBL-202ENST00000448238 TRDV1A0A1B0GX56 115 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 MPDU1O75352 247 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 PGA3P0DJD8 388 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 GCAP28676 217 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 PGGT1BP53609 377 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 SEMG2Q02383 582 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 DHRS4L2Q6PKH6 230 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 FYTTD1Q96QD9 318 aaKnown RBP8.2□□□□□ -1.1
NIPBL-202ENST00000448238 ACER3Q9NUN7 267 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 RCC2Q9P258 522 aaKnown RBP8.2□□□□□ -1.1
NIPBL-202ENST00000448238 CXorf49A8MYA2 514 aaPredicted RBP8.2□□□□□ -1.1
NIPBL-202ENST00000448238 DSC1Q08554 894 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 TSPAN31Q12999 210 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 MAMSTRQ6ZN01 415 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 DPY19L2P2Q6ZN68 376 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 LHFPL2Q6ZUX7 228 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 OR2T10Q8NGZ9 312 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 ABHD4Q8TB40 342 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 ATRNL1Q5VV63 1379 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 FOXO6A8MYZ6 492 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 SDHDO14521 159 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 SIGLEC6O43699 453 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 ACP1P24666 158 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 CLDN18P56856 261 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 ALKBH1Q13686 389 aaKnown RBP8.2□□□□□ -1.1
NIPBL-202ENST00000448238 PLA1AQ53H76 456 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 PARM1Q6UWI2 310 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 HGDQ93099 445 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 IER2Q9BTL4 223 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 LANCL2Q9NS86 450 aa8.2□□□□□ -1.1
NIPBL-202ENST00000448238 NEXMIFQ5QGS0 1516 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 OR5B21A6NL26 309 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 HS3ST1O14792 307 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 RBFOX2O43251 390 aaKnown RBP eCLIP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ZNF749O43361 778 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 LIPAP38571 399 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 PAFAH1B2P68402 229 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 OR2A2Q6IF42 318 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 C14orf80Q86SX3 495 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 TGIF2LXQ8IUE1 241 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ANKLE1Q8NAG6 615 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 TMEM178AQ8NBL3 297 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 OR14A16Q8NHC5 309 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 AQP10Q96PS8 301 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ZNFX1Q9P2E3 1918 aaKnown RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ZNF680Q8NEM1 530 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 OR51F2Q8NH61 342 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 LRRC3BQ96PB8 259 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 UTP23Q9BRU9 249 aaKnown RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 CLDND1Q9NY35 253 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SLC23A1Q9UHI7 598 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 RAXQ9Y2V3 346 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SPATA31A5Q5VU36 1347 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SPATA31A7Q8IWB4 1347 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 FEZF1A0PJY2 475 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 H7C1C5 153 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 PRAMEF11O60813 436 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SFTA3P0C7M3 94 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SNRPBP14678 240 aaKnown RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 OR1Q1Q15612 314 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 PABPC1L2AQ5JQF8 200 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 LEMD1Q68G75 181 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 NCBP2-AS2Q69YL0 99 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ACVR1CQ8NER5 493 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ADOQ96SZ5 270 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 PDZD7Q9H5P4 517 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 Q9N2K0 584 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 HEATR5AQ86XA9 2040 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 PTGFRP43088 359 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 NPBWR2P48146 333 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ZNF766Q5HY98 468 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 CALHM1Q8IU99 346 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 OLIG1Q8TAK6 271 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ZDHHC18Q9NUE0 388 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SP1P08047 785 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ACAA1P09110 424 aaPredicted RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SLC6A1P30531 599 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 LBX1P52954 281 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SLC5A12Q1EHB4 618 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 ZNF687Q8N1G0 1237 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 C2orf50Q96LR7 162 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 DEFB118Q96PH6 123 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 TPSD1Q9BZJ3 242 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SMDT1Q9H4I9 107 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 WSB1Q9Y6I7 421 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 LIPFP07098 398 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 DIO1P49895 249 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 TCL1AP56279 114 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 TMEM136Q6ZRR5 245 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SFTPA2Q8IWL1 248 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SFTPA1Q8IWL2 248 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 NTNG2Q96CW9 530 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 TOE1Q96GM8 510 aaKnown RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 CDX2Q99626 313 aaPredicted RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 WDR83Q9BRX9 315 aaKnown RBP8.19□□□□□ -1.1
NIPBL-202ENST00000448238 SRD5A3Q9H8P0 318 aa8.19□□□□□ -1.1
NIPBL-202ENST00000448238 HIST1H1EP10412 219 aaKnown RBP8.18□□□□□ -1.1
NIPBL-202ENST00000448238 FGF3P11487 239 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms