RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 FLYWCH2Q96CP2 140 aaKnown RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 P2RY11Q96G91 374 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 C10orf90Q96M02 699 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NECTIN4Q96NY8 510 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 FEVQ99581 238 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 HOXD1Q9GZZ0 328 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SRPK3Q9UPE1 567 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 LIPT1Q9Y234 373 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 HS3ST3A1Q9Y663 406 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SHROOM3Q8TF72 1996 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NEO1Q92859 1461 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 MTCL1Q9Y4B5 1905 aaKnown RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 UNCXA6NJT0 531 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF724A8MTY0 619 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 MPTX1A8MV57 137 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CXorf49A8MYA2 514 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 FCN1O00602 326 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 RAB29O14966 203 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 WDR1O75083 606 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 LDB3O75112 727 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CAPNS1P04632 268 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CDKN2BP42772 138 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 LY6G5CQ5SRR4 150 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OTOP1Q7RTM1 612 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 LRP10Q7Z4F1 713 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 DCXRQ7Z4W1 244 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 AMIGO3Q86WK7 504 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ACOT4Q8N9L9 421 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ZPLD1Q8TCW7 415 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 EDAQ92838 391 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 GMPPAQ96IJ6 420 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 HHLA2Q9UM44 414 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 PSG11Q9UQ72 335 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CEP170Q5SW79 1584 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NPFFO15130 113 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NME2P1O60361 137 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM127O75204 238 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SLITRK5O94991 958 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 HLA-DQB2P05538 268 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 GLAP06280 429 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 BCL3P20749 454 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 FGF7P21781 194 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SPCS3P61009 180 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 FAM3AP98173 230 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TWIST1Q15672 202 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 RNF212Q495C1 297 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TREML2Q5T2D2 321 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 METTL11BQ5VVY1 283 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR2T5Q6IEZ7 315 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TBPL2Q6SJ96 375 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CALHM1Q8IU99 346 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ADGRG5Q8IZF4 528 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR52E1Q8NGJ3 308 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR2T29Q8NH02 315 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 P2RX4Q99571 388 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CENPOQ9BU64 300 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 RTL8AQ9BWD3 113 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 VAMP5O95183 116 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TBX18O95935 607 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TAGLNQ01995 201 aaKnown RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CYBRD1Q53TN4 286 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM123Q8N131 208 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 KIR3DL3Q8N743 410 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SDR9C7Q8NEX9 313 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR4D9Q8NGE8 314 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR56B1Q8NGI3 324 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR9I1Q8NGQ6 314 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NTNG2Q96CW9 530 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 KTI12Q96EK9 354 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 MRPL20Q9BYC9 149 aaKnown RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 MAGT1Q9H0U3 335 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SIX4Q9UIU6 781 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 A4GNTQ9UNA3 340 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ACACAQ13085 2346 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 DDTLA6NHG4 134 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM233B4DJY2 109 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 K7ESF4 209 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 EMC8O43402 210 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 PRKRAO75569 313 aaKnown RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NCR1O76036 304 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR8G3PP0DMU2 310 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 NMUP48645 174 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF83P51522 516 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SUOXP51687 545 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 DLK1P80370 383 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 MLLT11Q13015 90 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-202ENST00000375405 TPBGQ13641 420 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 OR1C1Q15619 314 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 PSAPL1Q6NUJ1 521 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CYB561A3Q8NBI2 242 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 ADAMTS14Q8WXS8 1223 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SCAMP4Q969E2 229 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 PYURFQ96I23 114 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CD244Q9BZW8 370 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 CST9LQ9H4G1 147 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 SRD5A3Q9H8P0 318 aa4.25□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1W2PPC4 97 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 OR51F1A6NGY5 319 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ST8SIA5O15466 376 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 RFPL2O75678 378 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms