RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 RBM48Q5RL73 367 aaKnown RBP12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 UNQ6126/PRO20091Q6UXV3 157 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 COLCA1Q6ZS62 124 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 MEPCEQ7L2J0 689 aaKnown RBP12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 SHFQ7M4L6 423 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF525Q8N782 197 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 OTOSQ8NHW6 89 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF799Q96GE5 643 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 COPS4Q9BT78 406 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 DNAJC27Q9NZQ0 273 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 HSPE1-MOB4S4R3N1 261 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 PRKXP51817 358 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 EFNA4P52798 201 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 PRSS12P56730 875 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 PSG7Q13046 419 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 HLXQ14774 488 aaPredicted RBP12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 NKPD1Q17RQ9 610 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 CLEC12BQ2HXU8 276 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 LCN1P1Q5VSP4 162 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 DNM1P46Q6ZS02 220 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLC16A9Q7RTY1 509 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 FBLIM1Q8WUP2 373 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 RNF133Q8WVZ7 376 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 APOBEC3DQ96AK3 386 aaPredicted RBP12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 C1QTNF5Q9BXJ0 243 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 CCDC90BQ9GZT6 254 aa12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 BARX1Q9HBU1 254 aaPredicted RBP12.89□□□□□ -0.35
SMPDL3A-201ENST00000368440 F12P00748 615 aaPredicted RBP12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLC2A1P11166 492 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 RGS6P49758 472 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 TPTEP56180 551 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 SELENOVP59797 346 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 GGTLC2Q14390 218 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 SNAI3Q3KNW1 292 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 C1orf174Q8IYL3 243 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 RFLNBQ8N5W9 214 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 OR8J1Q8NGP2 316 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 RHOXF1Q8NHV9 184 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 THEM6Q8WUY1 208 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 SPTSSAQ969W0 71 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 KCNJ15Q99712 375 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 TTTY10Q9BZA0 68 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 BATF3Q9NR55 127 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 H2AFY2Q9P0M6 372 aaPredicted RBP12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 COPS3Q9UNS2 423 aa12.88□□□□□ -0.35
SMPDL3A-201ENST00000368440 A0A087WXM4 84 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLC22A31A6NKX4 558 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 PRR32B1ATL7 298 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 H3BSA7 217 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 LCATP04180 440 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 OPRL1P41146 370 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLC6A9P48067 706 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 MMP15P51511 669 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 TAF13Q15543 124 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 GID4Q8IVV7 300 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 CIARTQ8N365 385 aaPredicted RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF540Q8NDQ6 660 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 CMBLQ96DG6 245 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF582Q96NG8 517 aaPredicted RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 YTHDF1Q9BYJ9 559 aaKnown RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 RAB1BQ9H0U4 201 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ADGRL4Q9HBW9 690 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 PAK1IP1Q9NWT1 392 aaPredicted RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 SLCO1C1Q9NYB5 712 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 FBXO9Q9UK97 447 aaPredicted RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 BLOC1S6Q9UL45 172 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 FLNAP21333 2647 aaKnown RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZSCAN5BA6NJL1 495 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 J3QW42 95 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 NCR1O76036 304 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 APOL3O95236 402 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 TFAP2AP05549 437 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ALOX5APP20292 161 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 MAGEB1P43366 347 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 GTF2A1P52655 376 aaPredicted RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 TNK1Q13470 666 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 LRRN1Q6UXK5 716 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 AHSA2Q719I0 299 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 SATL1Q86VE3 508 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF283Q8N7M2 679 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ZNF454Q8N9F8 522 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 CNN2Q99439 309 aaKnown RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 TMUB1Q9BVT8 246 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 YIPF3Q9GZM5 350 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 MS4A5Q9H3V2 200 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 SCN3BQ9NY72 215 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 ERVK-18Q9QC07 812 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 LAMP5Q9UJQ1 280 aa12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 PURGQ9UJV8 347 aaKnown RBP12.87□□□□□ -0.35
SMPDL3A-201ENST00000368440 C17orf100A8MU93 164 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 PSMD9O00233 223 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 GABRB1P18505 474 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 CX3CR1P49238 355 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 NEDD8Q15843 81 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 DRAM2Q6UX65 266 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 FBXW12Q6X9E4 464 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 OR51G2Q8NGK0 314 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 SNX33Q8WV41 574 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 COG8Q96MW5 612 aa12.86□□□□□ -0.35
SMPDL3A-201ENST00000368440 MSL2Q9HCI7 577 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms