RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PRKCDQ05655 676 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 EGR3Q06889 387 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 COX10Q12887 443 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 HERPUD1Q15011 391 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 FAM189A2Q15884 450 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 MESTQ5EB52 335 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 PGM2L1Q6PCE3 622 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 NRMQ8IXM6 262 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 RNF113BQ8IZP6 322 aaKnown RBP11.43□□□□□ -0.58
VPS29-201ENST00000360579 PLPP7Q8NBV4 271 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 ZNF570Q96NI8 536 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS29-201ENST00000360579 UFSP2Q9NUQ7 469 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 ADAM18Q9Y3Q7 739 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 KPTNQ9Y664 436 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 RYR3Q15413 4870 aa11.43□□□□□ -0.58
VPS29-201ENST00000360579 DNAH3Q8TD57 4116 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 A0A1B0GVI7 797 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 SLC16A7O60669 478 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 MALLQ13021 153 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 FHL1Q13642 323 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 CYLC2Q14093 348 aaPredicted RBP11.42□□□□□ -0.58
VPS29-201ENST00000360579 OR8B8Q15620 311 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 KCNMB1Q16558 191 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 CDONQ4KMG0 1287 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 BEND6Q5SZJ8 279 aaPredicted RBP11.42□□□□□ -0.58
VPS29-201ENST00000360579 PRAMEF6Q5VXH4 476 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 SFRP4Q6FHJ7 346 aaPredicted RBP11.42□□□□□ -0.58
VPS29-201ENST00000360579 ERICH5Q6P6B1 374 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 C11orf88Q6PI97 169 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 COLCA1Q6ZS62 124 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 BTN2A1Q7KYR7 527 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 SPERTQ8NA61 448 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 OR13C2Q8NGS9 318 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 OR5R1Q8NH85 324 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 MRAPQ8TCY5 172 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 SPRYD4Q8WW59 207 aaPredicted RBP11.42□□□□□ -0.58
VPS29-201ENST00000360579 Q96M85 177 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 SYT4Q9H2B2 425 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 RERGLQ9H628 205 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 WDR76Q9H967 626 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 ZNRD1Q9P1U0 126 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 FBLN5Q9UBX5 448 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS29-201ENST00000360579 A4GNTQ9UNA3 340 aa11.42□□□□□ -0.58
VPS29-201ENST00000360579 COA3Q9Y2R0 106 aaPredicted RBP11.42□□□□□ -0.58
VPS29-201ENST00000360579 V9GYY5 206 aaPredicted RBP11.42□□□□□ -0.58
VPS29-201ENST00000360579 ANKRD61A6NGH8 418 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 OOEPA6NGQ2 149 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 PTBP3O95758 552 aaKnown RBP11.41□□□□□ -0.58
VPS29-201ENST00000360579 GABRA5P31644 462 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 LOXL3P58215 753 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 HIST1H3AP68431 136 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 KRR1Q13601 381 aaKnown RBP11.41□□□□□ -0.58
VPS29-201ENST00000360579 GK2Q14410 553 aaPredicted RBP11.41□□□□□ -0.58
VPS29-201ENST00000360579 TRAM2Q15035 370 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 OR8G1Q15617 311 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 MPPED2Q15777 294 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 ZBED5Q49AG3 693 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 HIST2H3PS2Q5TEC6 136 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 GPR139Q6DWJ6 353 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 NANOGP8Q6NSW7 305 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 METAP1DQ6UB28 335 aaPredicted RBP11.41□□□□□ -0.58
VPS29-201ENST00000360579 HIST2H3AQ71DI3 136 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 FAM122BQ7Z309 247 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 VMO1Q7Z5L0 202 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 ADCK1Q86TW2 530 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 CALHM3Q86XJ0 350 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 OFCC1Q8IZS5 231 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 STON2Q8WXE9 905 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 LZICQ8WZA0 190 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 TLCD1Q96CP7 247 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 DMRTB1Q96MA1 342 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 FNDC11Q9BVV2 318 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 CNTD2Q9H8S5 307 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 NMNAT1Q9HAN9 279 aaPredicted RBP11.41□□□□□ -0.58
VPS29-201ENST00000360579 SMURF1Q9HCE7 757 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 VSX1Q9NZR4 365 aaPredicted RBP11.41□□□□□ -0.58
VPS29-201ENST00000360579 AURKCQ9UQB9 309 aa11.41□□□□□ -0.58
VPS29-201ENST00000360579 RNASEK-C17orf49H0YIS7 233 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 OR10H3O60404 316 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 GMDSO60547 372 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 PRB2P02812 416 aaPredicted RBP11.4□□□□□ -0.58
VPS29-201ENST00000360579 EEF1B2P24534 225 aaKnown RBP11.4□□□□□ -0.58
VPS29-201ENST00000360579 SDHAP31040 664 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 ECH1Q13011 328 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 CYBRD1Q53TN4 286 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 SLC35E4Q6ICL7 350 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 DNM1P34Q6PK57 102 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 TMPRSS11FQ6ZWK6 438 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 PGAP1Q75T13 922 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 PDZD9Q8IXQ8 264 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 CMTM4Q8IZR5 234 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 BOLLQ8N9W6 283 aaKnown RBP11.4□□□□□ -0.58
VPS29-201ENST00000360579 OR8J3Q8NGG0 315 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 ACOT11Q8WXI4 607 aaPredicted RBP11.4□□□□□ -0.58
VPS29-201ENST00000360579 TPD52L3Q96J77 140 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 KAAG1Q9UBP8 84 aa11.4□□□□□ -0.58
VPS29-201ENST00000360579 RPUSD1Q9UJJ7 312 aaKnown RBP11.4□□□□□ -0.58
VPS29-201ENST00000360579 RAB21Q9UL25 225 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms