RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 MMP25Q9NPA2 562 aa14.2□□□□□ -0.14
HMGA1-202ENST00000347617 PILRBQ9UKJ0 227 aa14.2□□□□□ -0.14
HMGA1-202ENST00000347617 IGHV1OR21-1A0A087WYE8 117 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 A0A1B0GTH9 108 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 LAMTOR5O43504 91 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 IGKV1D-16P01601 117 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 GLAP06280 429 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 AGAP20933 346 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 PEAR1Q5VY43 1037 aaPredicted RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 OR10K2Q6IF99 312 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 ATG4DQ86TL0 474 aaPredicted RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 KMT5CQ86Y97 462 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 C10orf53Q8N6V4 93 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TCTEX1D2Q8WW35 142 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TMED6Q8WW62 240 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 FAM46BQ96A09 425 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TAAR9Q96RI9 348 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 LMF1Q96S06 567 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 MICU1Q9BPX6 476 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 PARP11Q9NR21 331 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TINAGQ9UJW2 476 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 THADAQ6YHU6 1953 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TRIOO75962 3097 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 EEF1E1-BLOC1S5C9J1V9 151 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 HCRTR1O43613 425 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 SSX5O60225 188 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 SFTA3P0C7M3 94 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 MUC1P15941 1255 aaPredicted RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 SERPINF1P36955 418 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 DVL1P1P54792 670 aaPredicted RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 SHBQ15464 509 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 ZNF260Q3ZCT1 412 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 MESTQ5EB52 335 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 GLYATL3Q5SZD4 288 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 WDR74Q6RFH5 385 aaPredicted RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 C5orf46Q6UWT4 87 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 ZNF600Q6ZNG1 722 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 NAA40Q86UY6 237 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 ANKRD9Q96BM1 317 aaPredicted RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TMEM41AQ96HV5 264 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 VSTM2LQ96N03 204 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 TSSK2Q96PF2 358 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 RNF126Q9BV68 326 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 ULBP3Q9BZM4 244 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 SELENOIQ9C0D9 397 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 NIT2Q9NQR4 276 aa14.19□□□□□ -0.14
HMGA1-202ENST00000347617 MRPS33Q9Y291 106 aaKnown RBP14.19□□□□□ -0.14
HMGA1-202ENST00000347617 H0YIG0 161 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 DUX1O43812 170 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 IFNA6P05013 189 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 ERCC1P07992 297 aaPredicted RBP14.18□□□□□ -0.14
HMGA1-202ENST00000347617 FBXO45P0C2W1 286 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 RNH1P13489 461 aaKnown RBP14.18□□□□□ -0.14
HMGA1-202ENST00000347617 S1PR1P21453 382 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 DHPSP49366 369 aaPredicted RBP14.18□□□□□ -0.14
HMGA1-202ENST00000347617 RIDAP52758 137 aaKnown RBP14.18□□□□□ -0.14
HMGA1-202ENST00000347617 SRSF3P84103 164 aaKnown RBP14.18□□□□□ -0.14
HMGA1-202ENST00000347617 ZNF585AQ6P3V2 769 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 PRSS41Q7RTY9 318 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 TRAPPC6BQ86SZ2 158 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 FJX1Q86VR8 437 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 CATSPERDQ86XM0 798 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 ANGPTL5Q86XS5 388 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 ZFP82Q8N141 532 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 PLPP7Q8NBV4 271 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 ASB5Q8WWX0 329 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 ZC3H10Q96K80 434 aaKnown RBP14.18□□□□□ -0.14
HMGA1-202ENST00000347617 TGM7Q96PF1 710 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 TSPAN32Q96QS1 320 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 HHLA2Q9UM44 414 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 TIMM10BQ9Y5J6 103 aa14.18□□□□□ -0.14
HMGA1-202ENST00000347617 TRAV20A0A0B4J274 112 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 IGHV5-51A0A0C4DH38 117 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 TO15178 435 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 TOX3O15405 576 aaPredicted RBP14.17□□□□□ -0.14
HMGA1-202ENST00000347617 FOXS1O43638 330 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 FARS2O95363 451 aaKnown RBP14.17□□□□□ -0.14
HMGA1-202ENST00000347617 FOSL1P15407 271 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 VAMP1P23763 118 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 DNASE1L1P49184 302 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 SULT1A2P50226 295 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 F2RL1P55085 397 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 IGLV3-21P80748 117 aaPredicted RBP14.17□□□□□ -0.14
HMGA1-202ENST00000347617 GXYLT1Q4G148 440 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 TMEM128Q5BJH2 165 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 KCTD9Q7L273 389 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 RABEPKQ7Z6M1 372 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 KDM8Q8N371 416 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 TMEM52Q8NDY8 209 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 OR10R2Q8NGX6 335 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 HIST1H2BAQ96A08 127 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 MALSU1Q96EH3 234 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 MVB12AQ96EY5 273 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 NECAB3Q96P71 396 aaPredicted RBP14.17□□□□□ -0.14
HMGA1-202ENST00000347617 CMKLR1Q99788 373 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 KCNK15Q9H427 330 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 DTX4Q9Y2E6 619 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 CEACAM18A8MTB9 384 aa14.17□□□□□ -0.14
HMGA1-202ENST00000347617 ISG15P05161 165 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms