RNA–Protein interactions for RNA: ENST00000338399.8

CDK5RAP3-201, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK5RAP3, Length 1,866 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-201ENST00000338399 HNRNPA0Q13151 305 aaKnown RBP12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 GABRA6Q16445 453 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 ZNF404Q494X3 552 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TMEM53Q6P2H8 277 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 NCCRP1Q6ZVX7 275 aaPredicted RBP12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 LUZP2Q86TE4 346 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 MCFD2Q8NI22 146 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TMEM106AQ96A25 262 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 PGAM5Q96HS1 289 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 SFXN3Q9BWM7 321 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 DHDHQ9UQ10 334 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TPRP12270 2363 aaKnown RBP12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 ATRXP46100 2492 aa12.86□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TRAV1-2A0A0B4J238 106 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 A0A0G2JNJ9 132 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 ANKRD61A6NGH8 418 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 SRMP19623 302 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 COX5AP20674 150 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 APEX1P27695 318 aaKnown RBP12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 HGFACQ04756 655 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 KRTAP27-1Q3LI81 207 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 BEND4Q6ZU67 534 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 CXorf67Q86X51 503 aaPredicted RBP12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TBC1D15Q8TC07 691 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 OR51E1Q8TCB6 317 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 ASB5Q8WWX0 329 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 NANOS1Q8WY41 292 aaKnown RBP12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 DACH2Q96NX9 599 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 B3GNT2Q9NY97 397 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 Q9UFV3 132 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TRBV5-7A0A0A0MS05 114 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 A0A1W2PR80 420 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TBX1O43435 398 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 GSG1Q2KHT4 349 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 GFOD2Q3B7J2 385 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 DRAM2Q6UX65 266 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 DPPA2Q7Z7J5 298 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TPRA1Q86W33 373 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 NR2C2APQ86WQ0 139 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 COMMD2Q86X83 199 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 OR13C3Q8NGS6 347 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 KCNS3Q9BQ31 491 aa12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 NXF2Q9GZY0 626 aaKnown RBP12.85□□□□□ -0.35
CDK5RAP3-201ENST00000338399 RP1L1Q8IWN7 2480 aaPredicted RBP12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 PKD1L2Q7Z442 2459 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 LOC100509620A0A075B734 347 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 A0A1B0GTI1 187 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 SYT7O43581 403 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 LMX1BO60663 402 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 OR10A3P58181 314 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 UBE2NP61088 152 aaKnown RBP12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 SNAI3Q3KNW1 292 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 MDP1Q86V88 176 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 ST6GALNAC3Q8NDV1 305 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 SOX7Q9BT81 388 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 C6orf62Q9GZU0 229 aaPredicted RBP12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 MMP27Q9H306 513 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 GPR84Q9NQS5 396 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 PLEKHB1Q9UF11 243 aaPredicted RBP12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 ATPIF1Q9UII2 106 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 SPTA1P02549 2419 aa12.84□□□□□ -0.35
CDK5RAP3-201ENST00000338399 TRGV8A0A0C4DH27 118 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 A0A1B0GVI7 797 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 RAF1P04049 648 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 LCATP04180 440 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 CCL2P13500 99 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 RAB3BP20337 219 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 BMP5P22003 454 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 CCNOP22674 350 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 STOMP27105 288 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 OPRM1P35372 400 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 PLP2Q04941 152 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 P2RY6Q15077 328 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 ZNF474Q6S9Z5 364 aaPredicted RBP12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 THRSPQ92748 146 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 TCF7L1Q9HCS4 588 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 AK6Q9Y3D8 172 aaKnown RBP12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 ACACBO00763 2458 aa12.83□□□□□ -0.36
CDK5RAP3-201ENST00000338399 TRAV8-7A0A075B6U6 113 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 IQCMA0A1B0GVH7 501 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 CD2P06729 351 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 COX5BP10606 129 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 BMXP51813 675 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 STAC2Q6ZMT1 411 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 ZNF584Q8IVC4 421 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 CCDC36Q8IYA8 594 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 C1orf162Q8NEQ5 155 aaPredicted RBP12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 MS4A3Q96HJ5 214 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 FAM71F1Q96KD3 344 aaPredicted RBP12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 LYZL4Q96KX0 146 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 OR10A2Q9H208 303 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 A0A0G2JK05 382 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 A0A0U1RQV5 110 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 C5orf49A4QMS7 147 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 A6NIN4 97 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 HOXC12P31275 282 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 CEP78Q5JTW2 689 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 BHLHA15Q7RTS1 189 aaPredicted RBP12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 OR52H1Q8NGJ2 320 aa12.82□□□□□ -0.36
CDK5RAP3-201ENST00000338399 OR6Q1Q8NGQ2 317 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms