RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ZNF704Q6ZNC4 412 aaPredicted RBP14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 GJC3Q8NFK1 279 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 GPR148Q8TDV2 347 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 MAP6Q96JE9 813 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 C4orf45Q96LM5 186 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 LURAP1Q96LR2 239 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 WDFY2Q96P53 400 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 MRI1Q9BV20 369 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 SLITRK2Q9H156 845 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 AKIP1Q9NQ31 210 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 FRRS1LQ9P0K9 344 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 GRIP1Q9Y3R0 1128 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 UGT2A1Q9Y4X1 527 aa14.38□□□□□ -0.11
PDLIM1-201ENST00000329399 FAM221AA4D161 298 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 OR4C45A6NMZ5 311 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 SIAH2O43255 324 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 MRPL33O75394 65 aaKnown RBP14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 CTAG2O75638 210 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 ZFPL1O95159 310 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 MPZL1O95297 269 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 GPANK1O95872 356 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 ISG15P05161 165 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 SSTR2P30874 369 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 OPRL1P41146 370 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 FAM27BQ5VT28 67 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 TFAP2EQ6VUC0 442 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 STAC2Q6ZMT1 411 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 WDFY1Q8IWB7 410 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 ZNF676Q8N7Q3 588 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 RNF166Q96A37 237 aaPredicted RBP14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 SLAMF6Q96DU3 332 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 C6orf62Q9GZU0 229 aaPredicted RBP14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 NOSIPQ9Y314 301 aaKnown RBP14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 LRP12Q9Y561 859 aa14.37□□□□□ -0.11
PDLIM1-201ENST00000329399 TRBV5-5A0A0J9YX44 114 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 A0A1W2PPR1 153 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 PRR32B1ATL7 298 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 RPL36A-HNRNPH2H7BZ11 118 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 RPP14O95059 124 aaKnown RBP14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 EPXP11678 715 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 CALRP27797 417 aaKnown RBP14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 PSMB10P40306 273 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 RANBP1P43487 201 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 SELENOPP49908 381 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 PCBD1P61457 104 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 RPS11P62280 158 aaKnown RBP eCLIP14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 SORDQ00796 357 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 HSD17B12Q53GQ0 312 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 SPANXN2Q5MJ10 180 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 TMEM244Q5VVB8 128 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 LRRN1Q6UXK5 716 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 ABHD12BQ7Z5M8 362 aaPredicted RBP14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 CATSPERDQ86XM0 798 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 TTTY10Q9BZA0 68 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 LIME1Q9H400 295 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 PRSS50Q9UI38 385 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 GDF2Q9UK05 429 aaPredicted RBP14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 ADAM30Q9UKF2 790 aa14.36□□□□□ -0.11
PDLIM1-201ENST00000329399 CADP27708 2225 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 MAGEB4O15481 346 aaPredicted RBP14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 THBDP07204 575 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 CST2P09228 141 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 UBCP0CG48 685 aaKnown RBP14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 NANOS3P60323 173 aaKnown RBP14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 HIST1H3AP68431 136 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 ECH1Q13011 328 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 HNRNPA0Q13151 305 aaKnown RBP14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 DDI2Q5TDH0 399 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 HIST2H3PS2Q5TEC6 136 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 HIST2H3AQ71DI3 136 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 CCDC54Q8NEL0 328 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 FAM222BQ8WU58 562 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 CEP19Q96LK0 163 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 AMELYQ99218 206 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 BARHL1Q9BZE3 327 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 SLCO5A1Q9H2Y9 848 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 TPK1Q9H3S4 243 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 ZCCHC4Q9H5U6 513 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 SMURF1Q9HCE7 757 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 LHFPL6Q9Y693 200 aa14.35□□□□□ -0.11
PDLIM1-201ENST00000329399 A6NNC1 897 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 LOC110117498-PIK3R3F6TDL0 507 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 C16orf97H3BN30 126 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 SRSF10O75494 262 aaKnown RBP14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 IGHV3-9P01782 118 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 CD2P06729 351 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 RAB3BP20337 219 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 PTBP1P26599 531 aaKnown RBP eCLIP14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 PPP5CP53041 499 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 FOXG1P55316 489 aaPredicted RBP14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 PPP3R1P63098 170 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 DAZAP2Q15038 168 aaPredicted RBP14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 TAF13Q15543 124 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 SGCAQ16586 387 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 GABRG1Q8N1C3 465 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 LRRC46Q96FV0 321 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 FOXN4Q96NZ1 517 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 PDCD1LG2Q9BQ51 273 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 SP140LQ9H930 580 aa14.34□□□□□ -0.11
PDLIM1-201ENST00000329399 DDX28Q9NUL7 540 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms