RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PNRC2Q9NPJ4 139 aaKnown RBP17.76■□□□□ 0.43
VPS53-201ENST00000291074 RAB27BO00194 218 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 ZNF35P13682 527 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 TRIM61Q5EBN2 209 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 DMRTC1Q5HYR2 192 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 RAET1LQ5VY80 246 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 TMED4Q7Z7H5 227 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 ZBTB8AQ96BR9 441 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 FOXRED1Q96CU9 486 aaPredicted RBP17.76■□□□□ 0.43
VPS53-201ENST00000291074 ZNF700Q9H0M5 742 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 SCPEP1Q9HB40 452 aa17.76■□□□□ 0.43
VPS53-201ENST00000291074 PLSCR5A0PG75 271 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 LEUTXA8MZ59 168 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 CYB5AP00167 134 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ITGB2P05107 769 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 VSIG8P0DPA2 414 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ADH6P28332 368 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 HIST3H3Q16695 136 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 SLC22A6Q4U2R8 563 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 MAML2Q8IZL2 1156 aaPredicted RBP17.75■□□□□ 0.43
VPS53-201ENST00000291074 CHST4Q8NCG5 386 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 OR2AK2Q8NG84 335 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 TNFAIP8L1Q8WVP5 186 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 FAM71F1Q96KD3 344 aaPredicted RBP17.75■□□□□ 0.43
VPS53-201ENST00000291074 IER2Q9BTL4 223 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ZNF160Q9HCG1 818 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 GPR84Q9NQS5 396 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 C5orf63A6NC05 138 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 C9J4A7 227 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 YKT6O15498 198 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 LAMTOR5O43504 91 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 RAB3AP20336 220 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 SLC35A1P78382 337 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ZFP36L1Q07352 338 aaKnown RBP17.75■□□□□ 0.43
VPS53-201ENST00000291074 NKPD1Q17RQ9 610 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 PHYHD1Q5SRE7 291 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 SIGIRRQ6IA17 410 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 OPN5Q6U736 354 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 GTPBP8Q8N3Z3 284 aaPredicted RBP17.75■□□□□ 0.43
VPS53-201ENST00000291074 SLC22A24Q8N4F4 322 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 UCN2Q96RP3 112 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ZNF736B4DX44 427 aaPredicted RBP17.75■□□□□ 0.43
VPS53-201ENST00000291074 M0R233 179 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 CYC1P08574 325 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ZNF735P0CB33 412 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ZNF20P17024 532 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 QRFPP83859 136 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 ZNF468Q5VIY5 522 aaPredicted RBP17.75■□□□□ 0.43
VPS53-201ENST00000291074 C17orf107Q6ZR85 190 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 FJX1Q86VR8 437 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 GVQW1Q8N7I0 195 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 OR5D14Q8NGL3 314 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 NUDCD2Q8WVJ2 157 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 CYYR1Q96J86 154 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 RADILQ96JH8 1075 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 OPN4Q9UHM6 478 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 RAB22AQ9UL26 194 aa17.75■□□□□ 0.43
VPS53-201ENST00000291074 C19orf67A6NJJ6 358 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 ZSCAN5BA6NJL1 495 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 RAB6AP20340 208 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 CX3CR1P49238 355 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 SGCAQ16586 387 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 LPAL2Q16609 132 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 ZNF260Q3ZCT1 412 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 SCGB2B2Q4G0G5 96 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 SUN5Q8TC36 379 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 AQP3Q92482 292 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 PTX4Q96A99 478 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 ZNF385AQ96PM9 386 aaKnown RBP17.74■□□□□ 0.43
VPS53-201ENST00000291074 SLC6A7Q99884 636 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 KIAA1549Q9HCM3 1950 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 A0A0A6YYH2 397 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 TMEM82A0PJX8 343 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 A6NJ64 397 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 E9PLN8 166 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 SMAD9O15198 467 aaKnown RBP17.74■□□□□ 0.43
VPS53-201ENST00000291074 OPCMLQ14982 345 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 EXT1Q16394 746 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 AWAT2Q6E213 333 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 ZNF529Q6P280 563 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 FAM57BQ71RH2 274 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 FAM109AQ8N4B1 249 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 ZNF416Q9BWM5 594 aa17.74■□□□□ 0.43
VPS53-201ENST00000291074 METTL21EPA6NDL7 271 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 CRYZL1O95825 349 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 LIPCP11150 499 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 LIFP15018 202 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 SSR4P51571 173 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 DHODHQ02127 395 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 ZNF239Q16600 458 aaKnown RBP17.73■□□□□ 0.43
VPS53-201ENST00000291074 OR52W1Q6IF63 320 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 HDDC2Q7Z4H3 204 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 TRAPPC6BQ86SZ2 158 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 CD163Q86VB7 1156 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 ANGPTL5Q86XS5 388 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 ZNF584Q8IVC4 421 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 BPIFB2Q8N4F0 458 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 TMEM156Q8N614 296 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 OR2Y1Q8NGV0 311 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 NICN1Q9BSH3 213 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms