RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 RAD23AP54725 363 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 SMIM11AP58511 58 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 IL13RA1P78552 427 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 TRAP1Q12931 704 aaKnown RBP10.67□□□□□ -0.7
CD44-203ENST00000278386 GK2Q14410 553 aaPredicted RBP10.67□□□□□ -0.7
CD44-203ENST00000278386 ZNF181Q2M3W8 571 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 TUSC1Q2TAM9 212 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 PRAMEF6Q5VXH4 476 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 PGAP1Q75T13 922 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 OR6V1Q8N148 313 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 C19orf18Q8NEA5 215 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 SPRYD4Q8WW59 207 aaPredicted RBP10.67□□□□□ -0.7
CD44-203ENST00000278386 RAB40AQ8WXH6 277 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 MCUR1Q96AQ8 359 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 UPRTQ96BW1 309 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 TECTBQ96PL2 329 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 NUDT16L1Q9BRJ7 211 aaKnown RBP10.67□□□□□ -0.7
CD44-203ENST00000278386 NSRP1Q9H0G5 558 aaKnown RBP10.67□□□□□ -0.7
CD44-203ENST00000278386 MMADHCQ9H3L0 296 aaPredicted RBP10.67□□□□□ -0.7
CD44-203ENST00000278386 UFSP2Q9NUQ7 469 aa10.67□□□□□ -0.7
CD44-203ENST00000278386 M0R135 149 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 PHYHO14832 338 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 FAM20BO75063 409 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 PPIAL4GP0DN37 164 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 PAX2Q02962 417 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 ECH1Q13011 328 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 SLC9A3R2Q15599 337 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 OR8G1Q15617 311 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 RFX4Q33E94 735 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 DCDC5Q6ZRR9 648 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 SPATC1Q76KD6 591 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 OR52L1Q8NGH7 329 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 SLCO4A1Q96BD0 722 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 ZNF799Q96GE5 643 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 FUZQ9BT04 418 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 ADAT1Q9BUB4 502 aaKnown RBP10.66□□□□□ -0.7
CD44-203ENST00000278386 FAM107BQ9H098 131 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 MAGEL2Q9UJ55 1249 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 TMCC3Q9ULS5 477 aa10.66□□□□□ -0.7
CD44-203ENST00000278386 SOX21Q9Y651 276 aaPredicted RBP10.66□□□□□ -0.7
CD44-203ENST00000278386 CMYA5Q8N3K9 4069 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 CLDN34H7C241 214 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 ARPC3O15145 178 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 PLATP00750 562 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 FABP3P05413 133 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 ZNF823P16415 610 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 RRM2P31350 389 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 GGT2P36268 569 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 IFNGR2P38484 337 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 PMELP40967 661 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 CD200P41217 278 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 GATA4P43694 442 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 TPTEP56180 551 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 FGF12P61328 243 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.65□□□□□ -0.7
CD44-203ENST00000278386 MAB21L1Q13394 359 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 CLEC12AQ5QGZ9 265 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 PRR31Q5SQ13 230 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 SLC35F1Q5T1Q4 408 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 GPR157Q5UAW9 335 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 WDR25Q64LD2 544 aaPredicted RBP10.65□□□□□ -0.7
CD44-203ENST00000278386 LYPD2Q6UXB3 125 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 BRD3OSQ6XYD6 125 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 COLCA1Q6ZS62 124 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 C9orf139Q6ZV77 190 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 ZBTB46Q86UZ6 589 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 CELF2-AS1Q8N7Q2 184 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 BOLLQ8N9W6 283 aaKnown RBP10.65□□□□□ -0.7
CD44-203ENST00000278386 PROKR2Q8NFJ6 384 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 TAF15Q92804 592 aaKnown RBP eCLIP10.65□□□□□ -0.7
CD44-203ENST00000278386 SPTSSAQ969W0 71 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 ZDHHC16Q969W1 377 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 ERGIC1Q969X5 290 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 PYURFQ96I23 114 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 ELAC2Q9BQ52 826 aaKnown RBP10.65□□□□□ -0.7
CD44-203ENST00000278386 ZNF696Q9H7X3 374 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 TNFRSF19Q9NS68 423 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 CYB5R1Q9UHQ9 305 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 NOP16Q9Y3C1 178 aaKnown RBP10.65□□□□□ -0.7
CD44-203ENST00000278386 MGAM2Q2M2H8 2515 aa10.65□□□□□ -0.7
CD44-203ENST00000278386 OR6C68A6NDL8 312 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 GGT3PA6NGU5 568 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 HOXA3O43365 443 aaPredicted RBP10.64□□□□□ -0.71
CD44-203ENST00000278386 ENSAO43768 121 aaKnown RBP10.64□□□□□ -0.71
CD44-203ENST00000278386 SEMG1P04279 462 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 CA6P23280 308 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 OMGP23515 440 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 PRDX6P30041 224 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 PYCR1P32322 319 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 RPS27P42677 84 aaKnown RBP10.64□□□□□ -0.71
CD44-203ENST00000278386 OR8B8Q15620 311 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 MPPED2Q15777 294 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 KCNJ8Q15842 424 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 RSPO1Q2MKA7 263 aaPredicted RBP10.64□□□□□ -0.71
CD44-203ENST00000278386 KRTAP27-1Q3LI81 207 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 ZNF620Q6ZNG0 422 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 NAA40Q86UY6 237 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 LNX2Q8N448 690 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 FITM2Q8N6M3 262 aa10.64□□□□□ -0.71
CD44-203ENST00000278386 OR10S1Q8NGN2 331 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms