RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 IL26Q9NPH9 171 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 MBNL1Q9NR56 388 aaKnown RBP5.21□□□□□ -1.58
SCN1A-216ENST00000637968 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-216ENST00000637968 SLC2A8Q9NY64 477 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 SPG21Q9NZD8 308 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 MTFP1Q9UDX5 166 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 SLC7A7Q9UM01 511 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 OR51B4Q9Y5P0 310 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TRAPPC2LH3BP13 241 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 RBMXP38159 391 aaKnown RBP5.21□□□□□ -1.58
SCN1A-216ENST00000637968 PBX2P40425 430 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 SLC6A8P48029 635 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 HMGA2P52926 109 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 ID2Q02363 134 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 PMPCAQ10713 525 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 SLC36A1Q7Z2H8 476 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TP53INP2Q8IXH6 220 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 OR6N2Q8NGY6 317 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 CRYGNQ8WXF5 182 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 FAM46AQ96IP4 442 aaKnown RBP5.21□□□□□ -1.58
SCN1A-216ENST00000637968 OR10C1Q96KK4 312 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TIMM29Q9BSF4 260 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 FBXO4Q9UKT5 387 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 RAB22AQ9UL26 194 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 CLEC4EQ9ULY5 219 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 A0A1W2PNV4 684 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PLPP2O43688 288 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CD3DP04234 171 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CD99P14209 185 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CD1CP29017 333 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TSFMP43897 325 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 GLIPR1P48060 266 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CSRP3P50461 194 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MMP16P51512 607 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 UCP3P55916 312 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 BAXQ07812 192 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 KIAA0040Q15053 153 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ELOBQ15370 118 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HNRNPA1L2Q32P51 320 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 DUSP28Q4G0W2 176 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 RAB42Q8N4Z0 105 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 OR5AK3PQ8NH89 298 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 VN1R17PQ8TDU5 208 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ATP6V0BQ99437 205 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ORAI3Q9BRQ5 295 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HDAC8Q9BY41 377 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FAM124BQ9H5Z6 455 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PDLIM7Q9NR12 457 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PLSCR4Q9NRQ2 329 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 RXFP3Q9NSD7 469 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FBXO34Q9NWN3 711 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 VPS29Q9UBQ0 182 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 WIPI2Q9Y4P8 454 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 WSB1Q9Y6I7 421 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MYO10Q9HD67 2058 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 A0A0G2JLL6 359 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TLCD2A6NGC4 264 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 GPR37L1O60883 481 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 LEFTY1O75610 366 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 GJB3O75712 270 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PAPLNO95428 1278 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 LGALS2P05162 132 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HLA-DQB2P05538 268 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 GJB1P08034 283 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PIRTP0C851 137 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PF4V1P10720 104 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 GDF5P43026 501 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PRLHRP49683 370 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 SSBP1Q04837 148 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HYAL1Q12794 435 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 ADIRFQ15847 76 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 EEF1DP3Q658K8 133 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 LEG1Q6P5S2 330 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PRSS54Q6PEW0 395 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 OGFOD3Q6PK18 319 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 PRRT2Q7Z6L0 340 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 BAGE3Q86Y29 109 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 BAGE2Q86Y30 109 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM104Q8NE00 496 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 OR4D9Q8NGE8 314 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CMTM2Q8TAZ6 248 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CLEC4CQ8WTT0 213 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 STARD4Q96DR4 205 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 MYADMQ96S97 322 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HINT2Q9BX68 163 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FZD8Q9H461 694 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 HSF4Q9ULV5 492 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 LSM5Q9Y4Y9 91 aaKnown RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 TANC1Q9C0D5 1861 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 A0A1B0GW15 77 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 SHISA3A0PJX4 238 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CLEC18AA5D8T8 446 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 IFITM5A6NNB3 132 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 RPL36A-HNRNPH2H7BZ11 118 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 M0QYG6 137 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 SEMA4FO95754 770 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FCGR2CP31995 323 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 FRKP42685 505 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-216ENST00000637968 KRTDAPP60985 99 aa5.2□□□□□ -1.58
SCN1A-216ENST00000637968 CTXN3Q4LDR2 81 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms