RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PIN1P1O15428 100 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 ARL6IP5O75915 188 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 TTRP02766 147 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 CLEC2LP0C7M8 214 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 EDN3P14138 238 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 IGHV1-2P23083 117 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 SOX6P35712 828 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 MAGEB1P43366 347 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 MXD1Q05195 221 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 KRTAP27-1Q3LI81 207 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 C3P1Q6ZMU1 363 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 ZNF283Q8N7M2 679 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 NAXEQ8NCW5 288 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 AKR7LQ8NHP1 331 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 SLC25A46Q96AG3 418 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 BARHL1Q9BZE3 327 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 NXF2Q9GZY0 626 aaKnown RBP16.1■□□□□ 0.17
CLN3-254ENST00000637050 TPK1Q9H3S4 243 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 A3GALT2U3KPV4 340 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 CHD8Q9HCK8 2581 aa16.1■□□□□ 0.17
CLN3-254ENST00000637050 TRAV1-2A0A0B4J238 106 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 CASKO14936 926 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 APOC1P02654 83 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 OCM2P0CE71 109 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 UBCP0CG48 685 aaKnown RBP16.09■□□□□ 0.17
CLN3-254ENST00000637050 GLI4P10075 376 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 MYL9P24844 172 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 MAPK3P27361 379 aaPredicted RBP16.09■□□□□ 0.17
CLN3-254ENST00000637050 RORCP51449 518 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 TMEM244Q5VVB8 128 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 DPPA2Q7Z7J5 298 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 OR51A4Q8NGJ6 313 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 TBC1D15Q8TC07 691 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 THRSPQ92748 146 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 SPTSSAQ969W0 71 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 NOX4Q9NPH5 578 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 SLC17A5Q9NRA2 495 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 ATPIF1Q9UII2 106 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 PROCRQ9UNN8 238 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 PIEZO2Q9H5I5 2752 aa16.09■□□□□ 0.17
CLN3-254ENST00000637050 PRRC2CQ9Y520 2896 aaKnown RBP16.09■□□□□ 0.17
CLN3-254ENST00000637050 TRBV5-7A0A0A0MS05 114 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 A0A1W2PPK0 400 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 ZNF503-AS2A6NEH8 195 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 TTLL8A6PVC2 850 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 F5H5K5 113 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 M0R135 149 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 HLA-HP01893 362 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 ACHEP22303 614 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 TGFBR3Q03167 851 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 RBPJQ06330 500 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 ZNF404Q494X3 552 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 PABPC1L2AQ5JQF8 200 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 TPRA1Q86W33 373 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 GABRG1Q8N1C3 465 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 SLC7A6Q92536 515 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 ZNF799Q96GE5 643 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 BOD1Q96IK1 185 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 RNF121Q9H920 327 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 HHLA2Q9UM44 414 aa16.08■□□□□ 0.17
CLN3-254ENST00000637050 SVILO95425 2214 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 BSNQ9UPA5 3926 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 LOC107986453A0A1B0GWG9 222 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 ERVH48-1M5A8F1 160 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 RAF1P04049 648 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 DBHP09172 617 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 ACSM4P0C7M7 580 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 SLC2A1P11166 492 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 COX5AP20674 150 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 ARR3P36575 388 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 HTR5AP47898 357 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 SOX2P48431 317 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 TBRG1Q3YBR2 411 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 HIKESHIQ53FT3 197 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 HSD17B12Q53GQ0 312 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 NAA40Q86UY6 237 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 ZNF433Q8N7K0 673 aaPredicted RBP16.08■□□□□ 0.16
CLN3-254ENST00000637050 OR8B12Q8NGG6 310 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 MCFD2Q8NI22 146 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 MMP27Q9H306 513 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 ZNF319Q9P2F9 582 aa16.08■□□□□ 0.16
CLN3-254ENST00000637050 ZZEF1O43149 2961 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 P2RY10O00398 339 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 UBL3O95164 117 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 ANOS1P23352 680 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 HNRNPA0Q13151 305 aaKnown RBP16.07■□□□□ 0.16
CLN3-254ENST00000637050 LY6DQ14210 128 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 DRAM2Q6UX65 266 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 LINC00299Q6ZSB3 139 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 FAM57BQ71RH2 274 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 ZNF610Q8N9Z0 462 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 CPEB3Q8NE35 698 aaKnown RBP16.07■□□□□ 0.16
CLN3-254ENST00000637050 TSEN15Q8WW01 171 aaKnown RBP16.07■□□□□ 0.16
CLN3-254ENST00000637050 ASB5Q8WWX0 329 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 TMEM106AQ96A25 262 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 SFXN3Q9BWM7 321 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 NOX3Q9HBY0 568 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 B3GNT2Q9NY97 397 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 TINAGQ9UJW2 476 aa16.07■□□□□ 0.16
CLN3-254ENST00000637050 H3BSH0 61 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms