RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 POP5Q969H6 163 aaKnown RBP17.53■□□□□ 0.4
CLN3-219ENST00000565778 ZNF582Q96NG8 517 aaPredicted RBP17.53■□□□□ 0.4
CLN3-219ENST00000565778 REEP1Q9H902 201 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 TBC1D23Q9NUY8 699 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 DCAF16Q9NXF7 216 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 CYB5R1Q9UHQ9 305 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 PRPF19Q9UMS4 504 aaKnown RBP17.53■□□□□ 0.4
CLN3-219ENST00000565778 PCDHB10Q9UN67 800 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 PPP1R3CQ9UQK1 317 aa17.53■□□□□ 0.4
CLN3-219ENST00000565778 SAMHD1Q9Y3Z3 626 aaKnown RBP17.53■□□□□ 0.4
CLN3-219ENST00000565778 DYNC1I1O14576 645 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 TCF21O43680 179 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 PNPP00491 289 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 GGT2P36268 569 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 RBMXP38159 391 aaKnown RBP17.52■□□□□ 0.4
CLN3-219ENST00000565778 HNRNPA0Q13151 305 aaKnown RBP17.52■□□□□ 0.4
CLN3-219ENST00000565778 MICAQ29983 383 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 NAA40Q86UY6 237 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 OR8G5Q8NG78 346 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 OR13G1Q8NGZ3 307 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 OR2T4Q8NH00 348 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 ST7LQ8TDW4 575 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 OR2V2Q96R30 315 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 ATF6BQ99941 703 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 REPIN1Q9BWE0 567 aaKnown RBP17.52■□□□□ 0.4
CLN3-219ENST00000565778 TSSK6Q9BXA6 273 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 HCAR1Q9BXC0 346 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 PLA2G12AQ9BZM1 189 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 WDR76Q9H967 626 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 MRPL22Q9NWU5 206 aaKnown RBP17.52■□□□□ 0.4
CLN3-219ENST00000565778 TAS2R1Q9NYW7 299 aa17.52■□□□□ 0.4
CLN3-219ENST00000565778 LCATP04180 440 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 ACSM4P0C7M7 580 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 ZNF362Q5T0B9 420 aaPredicted RBP17.51■□□□□ 0.39
CLN3-219ENST00000565778 ZNF283Q8N7M2 679 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 OR8D4Q8NGM9 314 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 CLPTM1LQ96KA5 538 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 DDOQ99489 341 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 THTPAQ9BU02 230 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 C1QTNF5Q9BXJ0 243 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 G6PC2Q9NQR9 355 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 VNN3Q9NY84 501 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 KCNG2Q9UJ96 466 aa17.51■□□□□ 0.39
CLN3-219ENST00000565778 A0A0G2JMP0 313 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 A0A0X1KG70 313 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 TVP23AA6NH52 213 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 TPTEP56180 551 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 LCN2P80188 198 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 TRAP1Q12931 704 aaKnown RBP17.5■□□□□ 0.39
CLN3-219ENST00000565778 MALLQ13021 153 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 DCAF12L2Q5VW00 463 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 COLCA1Q6ZS62 124 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 LNX2Q8N448 690 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 SLC37A3Q8NCC5 494 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 BHLHE23Q8NDY6 225 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 OR4M2Q8NGB6 313 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 OR51L1Q8NGJ5 315 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 CCDC124Q96CT7 223 aaKnown RBP17.5■□□□□ 0.39
CLN3-219ENST00000565778 ASB9Q96DX5 294 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 C19orf24Q9BVV8 132 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 C1orf21Q9H246 121 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 TMEM100Q9NV29 134 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 BAIAP2Q9UQB8 552 aa17.5■□□□□ 0.39
CLN3-219ENST00000565778 H0YL77 283 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 SOX14O95416 240 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 IGHV2-70P01814 119 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 RAP2AP10114 183 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 SELEP16581 610 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 RPS27P42677 84 aaKnown RBP17.49■□□□□ 0.39
CLN3-219ENST00000565778 SCGB2A2Q13296 93 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 KRTAP27-1Q3LI81 207 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 LRRC28Q86X40 367 aaPredicted RBP17.49■□□□□ 0.39
CLN3-219ENST00000565778 KLHL36Q8N4N3 616 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 TEX29Q8N6K0 151 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 OR2T33Q8NG76 320 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 OR10AD1Q8NGE0 317 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 OR9Q1Q8NGQ5 310 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 ZNRF4Q8WWF5 429 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 SPTSSAQ969W0 71 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 SLCO4A1Q96BD0 722 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 MAP6Q96JE9 813 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 CHID1Q9BWS9 393 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 DGCR6LQ9BY27 220 aa17.49■□□□□ 0.39
CLN3-219ENST00000565778 PNRC2Q9NPJ4 139 aaKnown RBP17.49■□□□□ 0.39
CLN3-219ENST00000565778 LOC105371242A0A075B767 164 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 IQCF6A8MYZ5 107 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 CST1P01037 141 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 AVPP01185 164 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 FMO3P31513 532 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 SRP9P49458 86 aaKnown RBP17.48■□□□□ 0.39
CLN3-219ENST00000565778 C1orf229Q6ZS94 237 aaPredicted RBP17.48■□□□□ 0.39
CLN3-219ENST00000565778 SPICQ8N5J4 248 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 OR4Q3Q8NH05 313 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 MEGF10Q96KG7 1140 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 SLC30A2Q9BRI3 323 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 TMPRSS13Q9BYE2 586 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 GCM1Q9NP62 436 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 ARMC1Q9NVT9 282 aa17.48■□□□□ 0.39
CLN3-219ENST00000565778 IGHV3-64DA0A0J9YX35 117 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 J3QLI3 93 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms