RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 SIRT4Q9Y6E7 314 aaPredicted RBP4.54□□□□□ -1.68
SPG11-220ENST00000559933 FLNCQ14315 2725 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 DOPEY1Q5JWR5 2465 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 UBR5O95071 2799 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 CIB4A0PJX0 185 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 TRIM64A6NGJ6 449 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 A8MXE2 369 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 CENPBD1B2RD01 187 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 J3QLW9 94 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 DVL2O14641 736 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 MYL12BO14950 172 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 AHCYL1O43865 530 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 HSMCR30P0CW71 290 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZNF823P16415 610 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZNF19P17023 458 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ATF4P18848 351 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 ALOX5APP20292 161 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 NR4A1P22736 598 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 APEX1P27695 318 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 PSMB9P28065 219 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 OPRM1P35372 400 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 TGFBR1P36897 503 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 MAGEB1P43366 347 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 PRKXP51817 358 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 NANOS3P60323 173 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 GABARAPL2P60520 117 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 PSG4Q00888 419 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 EMX1Q04741 257 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 SRSF1Q07955 248 aaKnown RBP eCLIP4.53□□□□□ -1.68
SPG11-220ENST00000559933 INSL4Q14641 139 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ESPL1Q14674 2120 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 RAB39AQ14964 217 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 MED22Q15528 200 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 GABRA6Q16445 453 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 PABPC1L2AQ5JQF8 200 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZNF684Q5T5D7 378 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZNF322Q6U7Q0 402 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 PRSS48Q7RTY5 328 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 NAA40Q86UY6 237 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 KLBQ86Z14 1044 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZNF584Q8IVC4 421 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 KLHL36Q8N4N3 616 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 PAQR4Q8N4S7 273 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZNF485Q8NCK3 441 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 CPEB3Q8NE35 698 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 OTOSQ8NHW6 89 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ITLN2Q8WWU7 325 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 MYDGFQ969H8 173 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 PELI1Q96FA3 418 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ZFP3Q96NJ6 502 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 OPALINQ96PE5 141 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 OR8B4Q96RC9 309 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 NR1H4Q96RI1 486 aaPredicted RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 DCLRE1CQ96SD1 692 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 SOX7Q9BT81 388 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 OR2H1Q9GZK4 316 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ACTR6Q9GZN1 396 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 NAA50Q9GZZ1 169 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 POFUT1Q9H488 388 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 RNF121Q9H920 327 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 SIAEQ9HAT2 523 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ELOVL3Q9HB03 270 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 CCNB1IP1Q9NPC3 277 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 ACOT13Q9NPJ3 140 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 SLC17A5Q9NRA2 495 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 CENPMQ9NSP4 180 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 HAO2Q9NYQ3 351 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 CNOT2Q9NZN8 540 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 NPAP1Q9NZP6 1156 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 JKAMPQ9P055 326 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 CYB5R1Q9UHQ9 305 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 GTF2A1LQ9UNN4 478 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 SLC22A13Q9Y226 551 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 EXOSC1Q9Y3B2 195 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 LRP12Q9Y561 859 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 N6AMT1Q9Y5N5 214 aa4.53□□□□□ -1.68
SPG11-220ENST00000559933 DIDO1Q9BTC0 2240 aaKnown RBP4.53□□□□□ -1.68
SPG11-220ENST00000559933 COL12A1Q99715 3063 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 CACNA1CQ13936 2221 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 UTP20O75691 2785 aaKnown RBP4.52□□□□□ -1.69
SPG11-220ENST00000559933 TENM4Q6N022 2769 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 LOC100509620A0A075B734 347 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 MAGEA13PA6NCF6 341 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 C22orf46C9J442 243 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 SMAD7O15105 426 aaKnown RBP4.52□□□□□ -1.69
SPG11-220ENST00000559933 SGCEO43556 437 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 LMX1BO60663 402 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 PNPP00491 289 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 HRGP04196 525 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 CRHP06850 196 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 THBDP07204 575 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 HOXD4P09016 255 aaPredicted RBP4.52□□□□□ -1.69
SPG11-220ENST00000559933 CST2P09228 141 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 OR2T7P0C7T2 308 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 NR2C1P13056 603 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 MYL12AP19105 171 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 NPR2P20594 1047 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 CCNOP22674 350 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 IL32P24001 234 aa4.52□□□□□ -1.69
SPG11-220ENST00000559933 CHRNB4P30926 498 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms