RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 BHLHE23Q8NDY6 225 aa13.77□□□□□ -0.21
VPS29-207ENST00000549970 OR8G5Q8NG78 346 aa13.77□□□□□ -0.21
VPS29-207ENST00000549970 ZNF582Q96NG8 517 aaPredicted RBP13.77□□□□□ -0.21
VPS29-207ENST00000549970 SIGLEC11Q96RL6 698 aa13.77□□□□□ -0.21
VPS29-207ENST00000549970 ATF6BQ99941 703 aa13.77□□□□□ -0.21
VPS29-207ENST00000549970 ACTR3BQ9P1U1 418 aa13.77□□□□□ -0.21
VPS29-207ENST00000549970 CDH10Q9Y6N8 788 aa13.77□□□□□ -0.21
VPS29-207ENST00000549970 H0YL77 283 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 PYCR1P32322 319 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 GGT2P36268 569 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 MMP16P51512 607 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 HMGA2P52926 109 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 PRSS12P56730 875 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 ZMYND11Q15326 602 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 RSPO1Q2MKA7 263 aaPredicted RBP13.76□□□□□ -0.21
VPS29-207ENST00000549970 RPL13AP3Q6NVV1 102 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 C1QL2Q7Z5L3 287 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 KLHL36Q8N4N3 616 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.76□□□□□ -0.21
VPS29-207ENST00000549970 PROKR2Q8NFJ6 384 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 SEMA6DQ8NFY4 1073 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 OR13G1Q8NGZ3 307 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 ZNF418Q8TF45 676 aaPredicted RBP13.76□□□□□ -0.21
VPS29-207ENST00000549970 PLA2G12AQ9BZM1 189 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 C7orf69Q9H7B7 122 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 GCM1Q9NP62 436 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 MRPL22Q9NWU5 206 aaKnown RBP13.76□□□□□ -0.21
VPS29-207ENST00000549970 CYB5R1Q9UHQ9 305 aa13.76□□□□□ -0.21
VPS29-207ENST00000549970 A0A0A6YYJ9 748 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 IGHV3-64DA0A0J9YX35 117 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 TCRBV5S2A0A599 114 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 HAX1O00165 279 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 BHLHE40O14503 412 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 FOXH1O75593 365 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 CCNB2O95067 398 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 GASTP01350 101 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 ACSM4P0C7M7 580 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 ZNF823P16415 610 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 GATA3P23771 443 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 ZFP36P26651 326 aaKnown RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 RPS27P42677 84 aaKnown RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 MAGEA2P43356 314 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 TRAP1Q12931 704 aaKnown RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 ECH1Q13011 328 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 KRTAP27-1Q3LI81 207 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 TMEM155Q4W5P6 130 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 SLC27A4Q6P1M0 643 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 NAA40Q86UY6 237 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 LRRC28Q86X40 367 aaPredicted RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 LINC00471Q8N535 108 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 OR51L1Q8NGJ5 315 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 OR4C15Q8NGM1 316 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 OR8D4Q8NGM9 314 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 ZNF420Q8TAQ5 688 aaPredicted RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 NSL1Q96IY1 281 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 MEGF10Q96KG7 1140 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 CCT8L2Q96SF2 557 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 SLC30A2Q9BRI3 323 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 HCAR1Q9BXC0 346 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 C1QTNF5Q9BXJ0 243 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 TRIM15Q9C019 465 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 PATZ1Q9HBE1 687 aaKnown RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 PNRC2Q9NPJ4 139 aaKnown RBP13.75□□□□□ -0.21
VPS29-207ENST00000549970 TBC1D23Q9NUY8 699 aa13.75□□□□□ -0.21
VPS29-207ENST00000549970 TVP23AA6NH52 213 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 IQCF6A8MYZ5 107 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 F5H5P2 479 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 TMEM178BH3BS89 294 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 MLNRO43193 412 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 LCATP04180 440 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 SRP9P49458 86 aaKnown RBP13.74□□□□□ -0.21
VPS29-207ENST00000549970 SEC61A1P61619 476 aaKnown RBP13.74□□□□□ -0.21
VPS29-207ENST00000549970 ZNF770Q6IQ21 691 aaPredicted RBP13.74□□□□□ -0.21
VPS29-207ENST00000549970 LYPD4Q6UWN0 246 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 COLCA1Q6ZS62 124 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 RASSF6Q6ZTQ3 369 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 DHFR2Q86XF0 187 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 AQP11Q8NBQ7 271 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 NANPQ8TBE9 248 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 MAP6Q96JE9 813 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 MMP26Q9NRE1 261 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 IL20Q9NYY1 176 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 OPN4Q9UHM6 478 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 U3KQV3 271 aa13.74□□□□□ -0.21
VPS29-207ENST00000549970 ZNF205O95201 554 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 CYB5R3P00387 301 aaPredicted RBP13.73□□□□□ -0.21
VPS29-207ENST00000549970 HLA-DPB1P04440 258 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 SELEP16581 610 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 MDH2P40926 338 aaKnown RBP13.73□□□□□ -0.21
VPS29-207ENST00000549970 MALLQ13021 153 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 GK2Q14410 553 aaPredicted RBP13.73□□□□□ -0.21
VPS29-207ENST00000549970 LCN8Q6JVE9 175 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 MOGAT3Q86VF5 341 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 ARHGAP24Q8N264 748 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 SLC37A3Q8NCC5 494 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 OR9Q1Q8NGQ5 310 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 OR2T4Q8NH00 348 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 ZNRF4Q8WWF5 429 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 SLCO4A1Q96BD0 722 aa13.73□□□□□ -0.21
VPS29-207ENST00000549970 DDOQ99489 341 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms