RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SLC30A7Q8NEW0 376 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 HTRA1Q92743 480 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 UFD1Q92890 307 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 MUL1Q969V5 352 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 POM121L2Q96KW2 1035 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 MGLLQ99685 303 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 ACOXLQ9NUZ1 547 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 NUFIP1Q9UHK0 495 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 RELNP78509 3460 aa13.93□□□□□ -0.18
PRPF40A-212ENST00000545856 SPTAN1Q13813 2472 aaKnown RBP13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF503-AS2A6NEH8 195 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 TMEM212A6NML5 194 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 PRR32B1ATL7 298 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 J3QKU1 62 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 OGG1O15527 345 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 CFL1P23528 166 aaKnown RBP13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 TP53I3Q53FA7 332 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 OR2G6Q5TZ20 316 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 TMEM108Q6UXF1 575 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF704Q6ZNC4 412 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF584Q8IVC4 421 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 CPEB3Q8NE35 698 aaKnown RBP13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 AKR7LQ8NHP1 331 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 FGFBP3Q8TAT2 258 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 SMAP2Q8WU79 429 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 SMIM19Q96E16 107 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 RADILQ96JH8 1075 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 MED18Q9BUE0 208 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 TBCCD1Q9NVR7 557 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 PLCE1Q9P212 2302 aa13.92□□□□□ -0.18
PRPF40A-212ENST00000545856 A0A0U1RQV5 110 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 TMEM269A0A1B0GVZ9 245 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CLEC18AA5D8T8 446 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 NKX2-6A6NCS4 301 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 LOC110117498-PIK3R3F6TDL0 507 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 H3BSA7 217 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 PLPP2O43688 288 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 SRSF10O75494 262 aaKnown RBP13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 AGFG2O95081 481 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 ACSM4P0C7M7 580 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 UBCP0CG48 685 aaKnown RBP13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 PLA2G2AP14555 144 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CPEP16870 476 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 GALP22466 123 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CX3CR1P49238 355 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 RAB39AQ14964 217 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CDK5R1Q15078 307 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 TIGD6Q17RP2 521 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 TMEM154Q6P9G4 183 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CLEC18BQ6UXF7 455 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 COLCA1Q6ZS62 124 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 MS4A15Q8N5U1 240 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF283Q8N7M2 679 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CLEC18CQ8NCF0 446 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 OR5L1Q8NGL2 311 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 APOBEC3DQ96AK3 386 aaPredicted RBP13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 C4orf45Q96LM5 186 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 C1QTNF5Q9BXJ0 243 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CDH20Q9HBT6 801 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 NOX3Q9HBY0 568 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 FAM206AQ9NX38 181 aa13.91□□□□□ -0.18
PRPF40A-212ENST00000545856 CCRL2O00421 344 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 CRYAAP02489 173 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 ISG15P05161 165 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 TFAP2AP05549 437 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 PATE4P0C8F1 98 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 ZNF12P17014 697 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 MAP2K4P45985 399 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 ALDH3B2P48448 385 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 IDH3GP51553 393 aaPredicted RBP13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 ALKBH1Q13686 389 aaKnown RBP13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 TSC22D1Q15714 1073 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 NEDD8Q15843 81 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 TIMM50Q3ZCQ8 353 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 OTPQ5XKR4 325 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 DMKNQ6E0U4 476 aaPredicted RBP13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 CATSPERDQ86XM0 798 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 KLBQ86Z14 1044 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 OR2G2Q8NGZ5 317 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 SSC4DQ8WTU2 575 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 GATAD2BQ8WXI9 593 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 OR5M11Q96RB7 305 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 BCL2L14Q9BZR8 327 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 COMMD4Q9H0A8 199 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 OR10A2Q9H208 303 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 ESRP2Q9H6T0 727 aaKnown RBP13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 ISG20L2Q9H9L3 353 aaKnown RBP13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 EIF3KQ9UBQ5 218 aaKnown RBP13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 SPEF1Q9Y4P9 236 aa13.9□□□□□ -0.18
PRPF40A-212ENST00000545856 PRR14LQ5THK1 2151 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 TUBAL3A6NHL2 446 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 DHRS7CA6NNS2 312 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 XRCC2O43543 280 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 SERPINA3P01011 423 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 LCKP06239 509 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 IGFBP2P18065 325 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 APEX1P27695 318 aaKnown RBP13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 PSMB9P28065 219 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 SLC6A9P48067 706 aa13.89□□□□□ -0.19
PRPF40A-212ENST00000545856 TUBA1BP68363 451 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms