RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 ZNF718Q3SXZ3 478 aa13.46□□□□□ -0.25
RPAIN-206ENST00000539417 SLC35D3Q5M8T2 416 aa13.46□□□□□ -0.25
RPAIN-206ENST00000539417 MBNL2Q5VZF2 373 aaKnown RBP13.46□□□□□ -0.25
RPAIN-206ENST00000539417 COLCA1Q6ZS62 124 aa13.46□□□□□ -0.25
RPAIN-206ENST00000539417 MEPCEQ7L2J0 689 aaKnown RBP13.46□□□□□ -0.25
RPAIN-206ENST00000539417 DLL4Q9NR61 685 aa13.46□□□□□ -0.25
RPAIN-206ENST00000539417 DNAJC27Q9NZQ0 273 aa13.46□□□□□ -0.25
RPAIN-206ENST00000539417 NKX1-2Q9UD57 310 aaPredicted RBP13.46□□□□□ -0.25
RPAIN-206ENST00000539417 COPS3Q9UNS2 423 aa13.46□□□□□ -0.25
RPAIN-206ENST00000539417 ZANQ9Y493 2812 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 IGHV4-30-2A0A087WSY4 118 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 LYNX1G3V0Z9 82 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 M0R233 179 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 NCR1O76036 304 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 LYNX1P0DP58 116 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 PEX2P28328 305 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 OTX1P32242 354 aaPredicted RBP13.45□□□□□ -0.26
RPAIN-206ENST00000539417 RBMXP38159 391 aaKnown RBP13.45□□□□□ -0.26
RPAIN-206ENST00000539417 MAGEB1P43366 347 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 MMP15P51511 669 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 SPRNQ5BIV9 151 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 NXNL2Q5VZ03 156 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 GALNT4Q8N4A0 578 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 OTOSQ8NHW6 89 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 FAM81AQ8TBF8 368 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 CMBLQ96DG6 245 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 HRASLS5Q96KN8 279 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 DCLRE1CQ96SD1 692 aaKnown RBP13.45□□□□□ -0.26
RPAIN-206ENST00000539417 C1QTNF5Q9BXJ0 243 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 TTTY10Q9BZA0 68 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 ENOPH1Q9UHY7 261 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 F8P00451 2351 aa13.45□□□□□ -0.26
RPAIN-206ENST00000539417 ACANP16112 2415 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 ZSCAN5BA6NJL1 495 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 M0R135 149 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 LILRA1O75019 489 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 APOL3O95236 402 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 HPXP02790 462 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 BMP4P12644 408 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 GCH1P30793 250 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 RAD23AP54725 363 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 ECH1Q13011 328 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 TRIP10Q15642 601 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 NKPD1Q17RQ9 610 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 Q6ZR03 302 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 MAPK1IP1LQ8NDC0 245 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 THEM6Q8WUY1 208 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 RNF133Q8WVZ7 376 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 ZNF799Q96GE5 643 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 ZNF582Q96NG8 517 aaPredicted RBP13.44□□□□□ -0.26
RPAIN-206ENST00000539417 SMR3AQ99954 134 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 COPS4Q9BT78 406 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 ADGRL4Q9HBW9 690 aa13.44□□□□□ -0.26
RPAIN-206ENST00000539417 TEP1Q99973 2627 aaKnown RBP13.44□□□□□ -0.26
RPAIN-206ENST00000539417 ZNF878C9JN71 531 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 H7C1Q1 480 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 PSMD9O00233 223 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 MAGEB4O15481 346 aaPredicted RBP13.43□□□□□ -0.26
RPAIN-206ENST00000539417 LCATP04180 440 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 ALOX5APP20292 161 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 OPRL1P41146 370 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 GGTLC2Q14390 218 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 ARL9Q6T311 187 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 SHFQ7M4L6 423 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 SLC16A9Q7RTY1 509 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 APOBEC3DQ96AK3 386 aaPredicted RBP13.43□□□□□ -0.26
RPAIN-206ENST00000539417 KCNJ15Q99712 375 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 PRRG3Q9BZD7 231 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 RASSF4Q9H2L5 321 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 BARX1Q9HBU1 254 aaPredicted RBP13.43□□□□□ -0.26
RPAIN-206ENST00000539417 MSL2Q9HCI7 577 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 PURGQ9UJV8 347 aaKnown RBP13.43□□□□□ -0.26
RPAIN-206ENST00000539417 N6AMT1Q9Y5N5 214 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 ORC6Q9Y5N6 252 aa13.43□□□□□ -0.26
RPAIN-206ENST00000539417 C17orf100A8MU93 164 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 RNF223E7ERA6 249 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 ENTPD6O75354 484 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 LYNP07948 512 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 CD99P14209 185 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 RGS6P49758 472 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 TPTEP56180 551 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 OR2T2Q6IF00 324 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 LRRN1Q6UXK5 716 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 PRSS45Q7RTY3 260 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 OR5AS1Q8N127 324 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 OR8J1Q8NGP2 316 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 OR2AE1Q8NHA4 323 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 SPTSSAQ969W0 71 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 HAVCR1Q96D42 359 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 RAB1BQ9H0U4 201 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 FAM118AQ9NWS6 357 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 ZNF319Q9P2F9 582 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 MED13LQ71F56 2210 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 H0YHG0 523 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 SMAD7O15105 426 aaKnown RBP13.42□□□□□ -0.26
RPAIN-206ENST00000539417 SPRY3O43610 288 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 IGHV1-46P01743 117 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 GABRB1P18505 474 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 KITLGP21583 273 aa13.42□□□□□ -0.26
RPAIN-206ENST00000539417 COL8A2P25067 703 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms