RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 INTS12Q96CB8 462 aaKnown RBP10.52□□□□□ -0.73
CLIP1-208ENST00000537004 DERL3Q96Q80 235 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 EMC6Q9BV81 110 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 ELOVL3Q9HB03 270 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 B3GAT2Q9NPZ5 323 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 MALT1Q9UDY8 824 aa10.52□□□□□ -0.73
CLIP1-208ENST00000537004 MBD3L4A6NDZ8 208 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 MBD3L3A6NE82 208 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 MBD3L5A6NJ08 208 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 OR4C45A6NMZ5 311 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 NOTOA8MTQ0 251 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 FAM25AB3EWG3 89 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 FAM25CB3EWG5 89 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 FAM25GB3EWG6 89 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SULT2B1O00204 365 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 PIN1P1O15428 100 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 CSF3P09919 207 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SRMP19623 302 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 APEX1P27695 318 aaKnown RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 MAGEB1P43366 347 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SCN1BQ07699 218 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 IL18Q14116 193 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 EIF2B1Q14232 305 aaKnown RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SLC17A1Q14916 467 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 GDPD3Q7L5L3 318 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 GPAT4Q86UL3 456 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF679Q8IYX0 411 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SAMD12Q8N8I0 201 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ACBD4Q8NC06 268 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 MBD3L2Q8NHZ7 208 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SETD6Q8TBK2 473 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ORAI1Q96D31 301 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF845Q96IR2 970 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 PPP1R3EQ9H7J1 279 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 CALHM2Q9HA72 323 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 AKAP6Q13023 2319 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 IGKV1D-43A0A0B4J1Z2 117 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 TMEM212A6NML5 194 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF814B7Z6K7 855 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 TRAF3IP2O43734 574 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 KHDRBS3O75525 346 aaKnown RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 APOA1P02647 267 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 EPXP11678 715 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ATF1P18846 271 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 PTBP1P26599 531 aaKnown RBP eCLIP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 KRTAP10-9P60411 292 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SLC35A1P78382 337 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ROM1Q03395 351 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 P2RY14Q15391 338 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 KCNJ8Q15842 424 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 Q499Y3 187 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 TMEM225Q6GV28 225 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 KCTD18Q6PI47 426 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 SPATC1Q76KD6 591 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 KRT77Q7Z794 578 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 LRRC28Q86X40 367 aaPredicted RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 CADM3Q8N126 398 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 PRSS35Q8N3Z0 413 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF454Q8N9F8 522 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 TRMT10AQ8TBZ6 339 aaKnown RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 PIGQQ9BRB3 760 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 ABHD6Q9BV23 337 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 COMMD4Q9H0A8 199 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 CLCF1Q9UBD9 225 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 AK6Q9Y3D8 172 aaKnown RBP10.51□□□□□ -0.73
CLIP1-208ENST00000537004 VPS13CQ709C8 3753 aa10.51□□□□□ -0.73
CLIP1-208ENST00000537004 TRBV5-5A0A0J9YX44 114 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 AQP7P3A6NL99 342 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 SSX4O60224 188 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 PAHP00439 452 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 EIF4EP06730 217 aaKnown RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF823P16415 610 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 MAPK3P27361 379 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 CD300CQ08708 224 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 RASGEF1BQ0VAM2 473 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 RIN1Q13671 783 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 TAB1Q15750 504 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF239Q16600 458 aaKnown RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 FDX2Q6P4F2 183 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 CCBE1Q6UXH8 406 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 TMPPEQ6ZT21 453 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 Q8N402 240 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF676Q8N7Q3 588 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 OXGR1Q96P68 337 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 RBP7Q96R05 134 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 SPOCK3Q9BQ16 436 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 MRPL13Q9BYD1 178 aaKnown RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 ZCCHC4Q9H5U6 513 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 CYSLTR2Q9NS75 346 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 KLHL13Q9P2N7 655 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 EXTL2Q9UBQ6 330 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 EEF1E1-BLOC1S5C9J1V9 151 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 EEF1E1O43324 174 aaKnown RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 RAMP1O60894 148 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF432O94892 652 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 PMS2P2O95744 297 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 WNT11O96014 354 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 IGHG1P01857 330 aa10.5□□□□□ -0.73
CLIP1-208ENST00000537004 TMIGD3P0DMS9 266 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-208ENST00000537004 ZNF17P17021 662 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms