RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DVL2O14641 736 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SYNGR4O95473 234 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 F12P00748 615 aaPredicted RBP7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 CXCR1P25024 350 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 PTTG1IPP53801 180 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 PNLIPRP2P54317 469 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 KRTAP10-9P60411 292 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 NHLH2Q02577 135 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 B3GLCTQ6Y288 498 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 SERPINA11Q86U17 422 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 BEST4Q8NFU0 473 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 FAM57AQ8TBR7 257 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 HAVCR2Q8TDQ0 301 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 GGACTQ9BVM4 153 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 NIPAL2Q9H841 368 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 MOKQ9UQ07 419 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 NCKAP5O14513 1909 aa7.03□□□□□ -1.28
LIMCH1-219ENST00000514096 A0A1B0GUH1 482 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 OR6C76A6NM76 312 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 B9A039 149 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 TMEM238C9JI98 176 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 CASKO14936 926 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 GP1BBP13224 206 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 C4BPBP20851 252 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 TACR3P29371 465 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 RPS5P46782 204 aaKnown RBP7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 MECP2P51608 486 aaKnown RBP7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 PRRX1P54821 245 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 DCAF7P61962 342 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 OR5I1Q13606 314 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 FCN2Q15485 313 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 CEBPEQ15744 281 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 TSTQ16762 297 aaKnown RBP7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 CTU2Q2VPK5 515 aaKnown RBP7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 TMEM225Q6GV28 225 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 SERPINA12Q8IW75 414 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 PDZD9Q8IXQ8 264 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 ARRDC1Q8N5I2 433 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 JAGN1Q8N5M9 183 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 NUDT10Q8NFP7 164 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 OR2T35Q8NGX2 323 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 OR52N5Q8NH56 324 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 SCMH1Q96GD3 660 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 PACRGQ96M98 296 aaPredicted RBP7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 NEU1Q99519 415 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 EMC6Q9BV81 110 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 ACSS1Q9NUB1 689 aaPredicted RBP7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 BTNL2Q9UIR0 455 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 MEMO1Q9Y316 297 aa7.02□□□□□ -1.28
LIMCH1-219ENST00000514096 PRAMEF27A3QJZ7 478 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TSPAN2O60636 221 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 UGT2B17O75795 530 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 IFNA10P01566 189 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 DAOP14920 347 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ELAVL4P26378 380 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 SLC6A8P48029 635 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 FAM98BQ52LJ0 330 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 CLLU1Q5K131 121 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 RTL6Q6ICC9 239 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TFAP2EQ6VUC0 442 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF100Q8IYN0 542 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM185AQ8NFB2 350 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 RAB3CQ96E17 227 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 C14orf79Q96F83 325 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 OPA3Q9H6K4 179 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 RNF167Q9H6Y7 350 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM181Q9P2C4 612 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 FAM215AQ9Y5M1 114 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ZANQ9Y493 2812 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A096LPE4 126 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A0J9YW62 118 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A1W2PPZ6 126 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 FABP12A6NFH5 140 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 SERINC4A6NH21 518 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TUBAL3A6NHL2 446 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 PHYHO14832 338 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ARG1P05089 322 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 RHCEP18577 417 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 CRISP3P54108 245 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TLE4Q04727 773 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 SCARB2Q14108 478 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 GAMTQ14353 236 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 COQ5Q5HYK3 327 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 TUSC5Q8IXB3 177 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 RIMKLAQ8IXN7 391 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ENTHD1Q8IYW4 607 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 RELL2Q8NC24 303 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 OR2M3Q8NG83 312 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF675Q8TD23 568 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 FAM216AQ8WUB2 273 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ITLN2Q8WWU7 325 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ANGPTL4Q9BY76 406 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 SSU72Q9NP77 194 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 FAM120CQ9NX05 1096 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 SLC25A37Q9NYZ2 338 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 NPAP1Q9NZP6 1156 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 P2RX2Q9UBL9 471 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ICAM5Q9UMF0 924 aa7.02□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF320A2RRD8 509 aa7.01□□□□□ -1.29
LIMCH1-219ENST00000514096 BLOC1S5-TXNDC5H3BN57 136 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms