RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 ZNF544Q6NX49 715 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 UNQ9370/PRO34162Q6UXP9 181 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 GABRG1Q8N1C3 465 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 HAVCR2Q8TDQ0 301 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 ZC3HAV1LQ96H79 300 aaKnown RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 ADAD1Q96M93 576 aaKnown RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 RBM24Q9BX46 236 aaKnown RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 ZCCHC4Q9H5U6 513 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 RPRD1BQ9NQG5 326 aaKnown RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 FOXD3Q9UJU5 478 aaPredicted RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 GNG8Q9UK08 70 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 ZNF726A6NNF4 738 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 SLC43A1O75387 559 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 ELK1P19419 428 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 FOXG1P55316 489 aaPredicted RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 RPS11P62280 158 aaKnown RBP eCLIP16.99■□□□□ 0.31
CCM2-216ENST00000488727 PHYHD1Q5SRE7 291 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 Q6ZT83 130 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 BEND4Q6ZU67 534 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 LINGO2Q7L985 606 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 UBE2J2Q8N2K1 259 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 ZNF519Q8TB69 540 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 SLC25A44Q96H78 314 aaPredicted RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 ALKBH3Q96Q83 286 aaPredicted RBP16.99■□□□□ 0.31
CCM2-216ENST00000488727 MNTQ99583 582 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 ACOXLQ9NUZ1 547 aa16.99■□□□□ 0.31
CCM2-216ENST00000488727 FAM25AB3EWG3 89 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 FAM25CB3EWG5 89 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 FAM25GB3EWG6 89 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 TRAPPC2P0DI81 140 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 TRAPPC2BP0DI82 140 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 PGA4P0DJD7 388 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 PGA3P0DJD8 388 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 RAB3BP20337 219 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 NPR2P20594 1047 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 FAM27E3Q08E93 113 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 MRPL28Q13084 256 aaKnown RBP16.98■□□□□ 0.31
CCM2-216ENST00000488727 MESTQ5EB52 335 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 KCTD20Q7Z5Y7 419 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 SNX18Q96RF0 628 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 MRPL13Q9BYD1 178 aaKnown RBP16.98■□□□□ 0.31
CCM2-216ENST00000488727 TTTY10Q9BZA0 68 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 LINC00470Q9BZP3 86 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 MARCH7Q9H992 704 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 B3GAT2Q9NPZ5 323 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 NPDC1Q9NQX5 325 aaPredicted RBP16.98■□□□□ 0.31
CCM2-216ENST00000488727 EXTL2Q9UBQ6 330 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 GRHPRQ9UBQ7 328 aa16.98■□□□□ 0.31
CCM2-216ENST00000488727 DOPEY2Q9Y3R5 2298 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 TRBV2A0A0J9YWF9 115 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 CNOT4O95628 575 aaKnown RBP16.97■□□□□ 0.31
CCM2-216ENST00000488727 CLDN1O95832 211 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 OR10A3P58181 314 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 FAPQ12884 760 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 TIGD4Q8IY51 512 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 C20orf196Q8IYI0 205 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 C19orf18Q8NEA5 215 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 OR13C5Q8NGS8 318 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 OR2T4Q8NH00 348 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 KCNJ15Q99712 375 aa16.97■□□□□ 0.31
CCM2-216ENST00000488727 NOTOA8MTQ0 251 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 C19orf84I3L1E1 186 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 MAGEB4O15481 346 aaPredicted RBP16.96■□□□□ 0.31
CCM2-216ENST00000488727 UTP20O75691 2785 aaKnown RBP16.96■□□□□ 0.31
CCM2-216ENST00000488727 RENP00797 406 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 IGHV1-2P23083 117 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 MAP2K3P46734 347 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 SPTAN1Q13813 2472 aaKnown RBP16.96■□□□□ 0.31
CCM2-216ENST00000488727 STAC2Q6ZMT1 411 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 CXorf67Q86X51 503 aaPredicted RBP16.96■□□□□ 0.31
CCM2-216ENST00000488727 CDC20BQ86Y33 519 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 RNASE6Q93091 150 aaKnown RBP16.96■□□□□ 0.31
CCM2-216ENST00000488727 TMEM54Q969K7 222 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 KCNK17Q96T54 332 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 ABRACLQ9P1F3 81 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 UPB1Q9UBR1 384 aa16.96■□□□□ 0.31
CCM2-216ENST00000488727 A1L4Q6 167 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 OR6C65A6NJZ3 312 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 TMEM127O75204 238 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 IGHG1P01857 330 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 ITGA5P08648 1049 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 CCKARP32238 428 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 TALDO1P37837 337 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 CARTPTQ16568 116 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 MZT2BQ6NZ67 158 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 LYPD4Q6UWN0 246 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 HDDC2Q7Z4H3 204 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 NOXO1Q8NFA2 376 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 OR6N1Q8NGY5 312 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 RNF166Q96A37 237 aaPredicted RBP16.96■□□□□ 0.3
CCM2-216ENST00000488727 ZNF837Q96EG3 531 aaPredicted RBP16.96■□□□□ 0.3
CCM2-216ENST00000488727 ELOVL5Q9NYP7 299 aa16.96■□□□□ 0.3
CCM2-216ENST00000488727 ICE1Q9Y2F5 2266 aa16.95■□□□□ 0.3
CCM2-216ENST00000488727 USP9YO00507 2555 aaPredicted RBP16.95■□□□□ 0.3
CCM2-216ENST00000488727 LINC00854A0A1B0GVQ3 168 aa16.95■□□□□ 0.3
CCM2-216ENST00000488727 PRR32B1ATL7 298 aa16.95■□□□□ 0.3
CCM2-216ENST00000488727 H7C1C5 153 aa16.95■□□□□ 0.3
CCM2-216ENST00000488727 KRT33AO76009 404 aa16.95■□□□□ 0.3
CCM2-216ENST00000488727 EIF4EP06730 217 aaKnown RBP16.95■□□□□ 0.3
CCM2-216ENST00000488727 TACSTD2P09758 323 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms