RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SERPINE2P07093 398 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 ZNF688P0C7X2 276 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 U2AF2P26368 475 aaKnown RBP eCLIP1.07□□□□□ -2.24
SMC4-220ENST00000488017 LOXP28300 417 aaPredicted RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 SLC1A1P43005 524 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 CCNG1P51959 295 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 CRISP1P54107 249 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 TAS2R31P59538 309 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 EIF3EP60228 445 aaKnown RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 RPS23P62266 143 aaKnown RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 CDK5Q00535 292 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 SP4Q02446 784 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 DMTNQ08495 405 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 ZNF616Q08AN1 781 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 DGCR6Q14129 220 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 QPRTQ15274 297 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 TAF9Q16594 264 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 AVPI1Q5T686 147 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 C22orf42Q6IC83 251 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 NPSR1Q6W5P4 371 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 SLC16A14Q7RTX9 510 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 SNX20Q7Z614 316 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 CMC1Q7Z7K0 106 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 CDH26Q8IXH8 852 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 IQCKQ8N0W5 287 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 C11orf72Q8NBR9 251 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 CHST4Q8NCG5 386 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 OR4A4PQ8NGN8 299 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 NUBPLQ8TB37 319 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 RAB3IL1Q8TBN0 382 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 CAPSLQ8WWF8 208 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 RTN4IP1Q8WWV3 396 aaPredicted RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 TMEM230Q96A57 120 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 RBBP8Q99708 897 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 ZNF717Q9BY31 904 aaPredicted RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 BEX1Q9HBH7 125 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 RETNQ9HD89 108 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 RRAGDQ9NQL2 400 aaPredicted RBP1.07□□□□□ -2.24
SMC4-220ENST00000488017 C8orf17Q9NRJ1 99 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 PTTG3PQ9NZH4 202 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 SIGLEC9Q9Y336 463 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 TMEM94Q12767 1356 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 PALLDQ8WX93 1383 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 ZNF407Q9C0G0 2248 aa1.07□□□□□ -2.24
SMC4-220ENST00000488017 ADGRL1O94910 1474 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 TRAV19A0A0A6YYK7 116 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 SMCO3A2RU48 225 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 GABRR3A8MPY1 467 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 LYRM9A8MSI8 78 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 KRBOX1C9JBD0 128 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 H7C1H1 209 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 K7EMT4 169 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 UBXN8O00124 270 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 SIRPB1O00241 398 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 PLPP1O14494 284 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 CIB2O75838 187 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 FLOT1O75955 427 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 SEMA3DO95025 777 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 IGLV3-25P01717 112 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 FTH1P02794 183 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 ARG1P05089 322 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 TROVE2P10155 538 aaKnown RBP eCLIP1.06□□□□□ -2.24
SMC4-220ENST00000488017 CD37P11049 281 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 ERGP11308 486 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 COL8A2P25067 703 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 OR1E1P30953 314 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 RBM34P42696 430 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 TNNT2P45379 298 aaPredicted RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 PRRX1P54821 245 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 RPL23P62829 140 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 CRADDP78560 199 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 PRR3P79522 188 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 HMGN5P82970 282 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 SEMG2Q02383 582 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 CYP24A1Q07973 514 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 SRSF5Q13243 272 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 TRAM2Q15035 370 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 RNASE13Q5GAN3 156 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 TCEAL5Q5H9L2 206 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 UBE2UQ5VVX9 321 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 UNQ9165/PRO28630Q6UXU0 137 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 ZYG11AQ6WRX3 759 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 MRPL55Q7Z7F7 128 aaKnown RBP1.06□□□□□ -2.24
SMC4-220ENST00000488017 NKAIN4Q8IVV8 208 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 TMEM256Q8N2U0 113 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 MIR7-3HGQ8N6C7 128 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 GPR26Q8NDV2 337 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 TTLQ8NG68 377 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 OR11H7Q8NGC8 314 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 OR52E2Q8NGJ4 325 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 OR13G1Q8NGZ3 307 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 LYPD6BQ8NI32 183 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 C17orf50Q8WW18 174 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 TCEAL3Q969E4 200 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 SLC25A46Q96AG3 418 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 RASD2Q96D21 266 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 RNF145Q96MT1 663 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 PANX1Q96RD7 426 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 TBL1YQ9BQ87 522 aa1.06□□□□□ -2.24
SMC4-220ENST00000488017 GGTLC1Q9BX51 225 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms