RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 SETD6Q8TBK2 473 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 ACTL9Q8TC94 416 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 RNF138Q8WVD3 245 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 KRT35Q92764 455 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 RDH5Q92781 318 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 CORO2AQ92828 525 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 OSTF1Q92882 214 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 TOMM40LQ969M1 308 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 CPNE4Q96A23 557 aaPredicted RBP3.54□□□□□ -1.84
VPS50-214ENST00000477935 ANKRD27Q96NW4 1050 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 DOK1Q99704 481 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 KCNS3Q9BQ31 491 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 ALKBH7Q9BT30 221 aaPredicted RBP3.54□□□□□ -1.84
VPS50-214ENST00000477935 ZNF416Q9BWM5 594 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 WDR41Q9HAD4 459 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 PFDN4Q9NQP4 134 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 CHRAC1Q9NRG0 131 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 TREX1Q9NSU2 369 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 FAM120CQ9NX05 1096 aaKnown RBP3.54□□□□□ -1.84
VPS50-214ENST00000477935 PRODH2Q9UF12 536 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 OPN4Q9UHM6 478 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 NSG2Q9Y328 171 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.54□□□□□ -1.84
VPS50-214ENST00000477935 U3KQK5 164 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 DNAH7Q8WXX0 4024 aa3.54□□□□□ -1.84
VPS50-214ENST00000477935 A0A087X0T9 212 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ST8SIA3O43173 380 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 VAPBO95292 243 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 MT-ND2P03891 347 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 SFTPBP07988 381 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 FAM228BP0C875 321 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 EVX1P49640 407 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 HNMTP50135 292 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 TNFRSF17Q02223 184 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 TGFBR3Q03167 851 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 CUL1Q13616 776 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 CPTPQ5TA50 214 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ANKRD22Q5VYY1 191 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 FBXW9Q5XUX1 488 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 HIST2H2AA3Q6FI13 130 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 MBOAT1Q6ZNC8 495 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 COX8CQ7Z4L0 72 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 SPATA21Q7Z572 469 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 LUZP1Q86V48 1076 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 RNF130Q86XS8 419 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 CPNE9Q8IYJ1 553 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ZNF100Q8IYN0 542 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 KATNAL2Q8IYT4 538 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 GTPBP8Q8N3Z3 284 aaPredicted RBP3.53□□□□□ -1.84
VPS50-214ENST00000477935 UXS1Q8NBZ7 420 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 OR5M1Q8NGP8 315 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 LINC01006Q8NI28 216 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 MUC7Q8TAX7 377 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ABHD3Q8WU67 409 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 UBE2E3Q969T4 207 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 TMBIM1Q969X1 311 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 BSCL2Q96G97 398 aaPredicted RBP3.53□□□□□ -1.84
VPS50-214ENST00000477935 ARL5BQ96KC2 179 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 TSNARE1Q96NA8 513 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 CENPKQ9BS16 269 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 THUMPD3Q9BV44 507 aaKnown RBP3.53□□□□□ -1.84
VPS50-214ENST00000477935 PAPOLGQ9BWT3 736 aaKnown RBP3.53□□□□□ -1.84
VPS50-214ENST00000477935 IL22Q9GZX6 179 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 EHD1Q9H4M9 534 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ZNF442Q9H7R0 627 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ZNF665Q9H7R5 613 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 C10orf88Q9H8K7 445 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 PRR34Q9NV39 138 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 TP53TG3Q9ULZ0 132 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 ABCG2Q9UNQ0 655 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 SLC22A14Q9Y267 594 aa3.53□□□□□ -1.84
VPS50-214ENST00000477935 CSMD3Q7Z407 3707 aa3.53□□□□□ -1.85
VPS50-214ENST00000477935 HEATR1Q9H583 2144 aaKnown RBP3.52□□□□□ -1.85
VPS50-214ENST00000477935 IGLV3-32A0A0A0MS00 114 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 GJE1A6NN92 205 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 ZNF724A8MTY0 619 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 ATP6V1G2-DDX39BF2Z307 99 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 K7EIL1 84 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 hCG_2039718K7EN88 272 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 TNFSF11O14788 317 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 PPIHO43447 177 aaKnown RBP3.52□□□□□ -1.85
VPS50-214ENST00000477935 SPOPO43791 374 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 TSPAN2O60636 221 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 NME6O75414 186 aaPredicted RBP3.52□□□□□ -1.85
VPS50-214ENST00000477935 RAD51DO75771 328 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 BCAS2O75934 225 aaPredicted RBP3.52□□□□□ -1.85
VPS50-214ENST00000477935 PPIAL4GP0DN37 164 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 NPR2P20594 1047 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 BCL3P20749 454 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 IL12BP29460 328 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 SERPINB1P30740 379 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 STIP1P31948 543 aaKnown RBP3.52□□□□□ -1.85
VPS50-214ENST00000477935 EVI2BP34910 448 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 FDFT1P37268 417 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 SSR2P43308 183 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 NDUFV3P56181 108 aaKnown RBP3.52□□□□□ -1.85
VPS50-214ENST00000477935 BPIFB3P59826 476 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 PRPS1P60891 318 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 C17orf67Q0P5P2 114 aa3.52□□□□□ -1.85
VPS50-214ENST00000477935 GABRA6Q16445 453 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms