RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PGA3P0DJD8 388 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 NFYAP23511 347 aaPredicted RBP16.94■□□□□ 0.3
VIM-203ENST00000469543 AP2S1P53680 142 aaPredicted RBP16.94■□□□□ 0.3
VIM-203ENST00000469543 OPCMLQ14982 345 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 MFSD13AQ14CX5 517 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 ADGRE4PQ86SQ3 457 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 TTC9Q92623 222 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 MED30Q96HR3 178 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 JSRP1Q96MG2 331 aaPredicted RBP16.94■□□□□ 0.3
VIM-203ENST00000469543 OR2A7Q96R45 310 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 SLC6A7Q99884 636 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 DUSP23Q9BVJ7 150 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 TAS2R8Q9NYW2 309 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 OPN4Q9UHM6 478 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 CHCHD2Q9Y6H1 151 aaPredicted RBP16.94■□□□□ 0.3
VIM-203ENST00000469543 FAM186AA6NE01 2351 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 A0A1W2PP11 408 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 RAB27BO00194 218 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 TRAF3IP2O43734 574 aaPredicted RBP16.93■□□□□ 0.3
VIM-203ENST00000469543 GNB3P16520 340 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 MECP2P51608 486 aaKnown RBP16.93■□□□□ 0.3
VIM-203ENST00000469543 ESCO2Q56NI9 601 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 ZNF704Q6ZNC4 412 aaPredicted RBP16.93■□□□□ 0.3
VIM-203ENST00000469543 NICN1Q9BSH3 213 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 PRO3102Q9H379 93 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 C1orf198Q9H425 327 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 CFAP47Q6ZTR5 3102 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 IL5P05113 134 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 LPLP06858 475 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 QDPRP09417 244 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 FSTP19883 344 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 ACHEP22303 614 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 CLDN6P56747 220 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 TMEM244Q5VVB8 128 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 MRPL14Q6P1L8 145 aaKnown RBP16.93■□□□□ 0.3
VIM-203ENST00000469543 DTX1Q86Y01 620 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 OR2AK2Q8NG84 335 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 IFI44Q8TCB0 444 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 EMC3Q9P0I2 261 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 PILRBQ9UKJ0 227 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 FXYD6-FXYD2A0A087WZ82 144 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 SNRPGP15A8MWD9 76 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 C3orf33Q6P1S2 294 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 C11orf88Q6PI97 169 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 FAM71F1Q96KD3 344 aaPredicted RBP16.93■□□□□ 0.3
VIM-203ENST00000469543 POTEKPQ9BYX7 375 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 FXYD6Q9H0Q3 95 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 SMOC1Q9H4F8 434 aa16.93■□□□□ 0.3
VIM-203ENST00000469543 MCRIP1C9JLW8 97 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 GIPP09681 153 aaPredicted RBP16.92■□□□□ 0.3
VIM-203ENST00000469543 VSIG8P0DPA2 414 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 GABRA1P14867 456 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 SUMO3P55854 103 aaPredicted RBP16.92■□□□□ 0.3
VIM-203ENST00000469543 CAMK2BQ13554 666 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 TOR2AQ5JU69 321 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 KLHL24Q6TFL4 600 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 ABHD12BQ7Z5M8 362 aaPredicted RBP16.92■□□□□ 0.3
VIM-203ENST00000469543 TMEM104Q8NE00 496 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 RNF138Q8WVD3 245 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 PTTG3PQ9NZH4 202 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 A0A1B0GTI1 187 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 L7N2F9 121 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 CYB5AP00167 134 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 ZNF17P17021 662 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 ZNF43P17038 809 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 BDKRB2P30411 391 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 LIN54Q6MZP7 749 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 ANGPTL5Q86XS5 388 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 OR4K17Q8NGC6 315 aa16.92■□□□□ 0.3
VIM-203ENST00000469543 UBE2QL1A1L167 161 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 ZNF736B4DX44 427 aaPredicted RBP16.91■□□□□ 0.3
VIM-203ENST00000469543 DKK1O94907 266 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 UMODP07911 640 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 ZNF735P0CB33 412 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 UBCP0CG48 685 aaKnown RBP16.91■□□□□ 0.3
VIM-203ENST00000469543 HSD11B1P28845 292 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 PHYHD1Q5SRE7 291 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 THEM4Q5T1C6 240 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 FJX1Q86VR8 437 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 BPIFB2Q8N4F0 458 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 UCN2Q96RP3 112 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 CDX2Q99626 313 aaPredicted RBP16.91■□□□□ 0.3
VIM-203ENST00000469543 SELENOIQ9C0D9 397 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 KNTC1P50748 2209 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 SULT2B1O00204 365 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 OR4E1P0C645 316 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 CCL3P10147 92 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 NAGAP17050 411 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 CLDN17P56750 224 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 ZNF121P58317 390 aaPredicted RBP16.91■□□□□ 0.3
VIM-203ENST00000469543 LPAL2Q16609 132 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 CDNFQ49AH0 187 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 C1orf100Q5SVJ3 147 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 ALKAL2Q6UX46 152 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 OR1M1Q8NGA1 313 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 OR13C8Q8NGS7 320 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 MR1Q95460 341 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 COQ3Q9NZJ6 369 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 UBQLN2Q9UHD9 624 aa16.91■□□□□ 0.3
VIM-203ENST00000469543 PTRH2Q9Y3E5 179 aaKnown RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms