RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 EPHA2P29317 976 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 WNT5AP41221 380 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 CRYBB2P43320 205 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 RAD52P43351 418 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 SEC61A1P61619 476 aaKnown RBP10.92□□□□□ -0.66
LINC00339-202ENST00000416769 ZNF362Q5T0B9 420 aaPredicted RBP10.92□□□□□ -0.66
LINC00339-202ENST00000416769 TMEM236Q5W0B7 351 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 TTC23Q5W5X9 447 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 C12orf73Q69YU5 71 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 TMEM154Q6P9G4 183 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 JAZF1Q86VZ6 243 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 LRRC18Q8N456 261 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 DHRSXQ8N5I4 330 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 ZNF555Q8NEP9 628 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 ZNF747Q9BV97 191 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 SUCNR1Q9BXA5 334 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 MRPL13Q9BYD1 178 aaKnown RBP10.92□□□□□ -0.66
LINC00339-202ENST00000416769 C7orf69Q9H7B7 122 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 CDH20Q9HBT6 801 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 UBAP1Q9NZ09 502 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 KLHL21Q9UJP4 597 aa10.92□□□□□ -0.66
LINC00339-202ENST00000416769 NDRG4Q9ULP0 352 aaKnown RBP10.92□□□□□ -0.66
LINC00339-202ENST00000416769 NOTCH1P46531 2555 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 IGKV1D-43A0A0B4J1Z2 117 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 TEX13CA0A0J9YWL9 993 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 DNAJC9-AS1A6NH13 148 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 H0YAE9 185 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 XKRYO14609 159 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 TPD52L2O43399 206 aaKnown RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 IGHG1P01857 330 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 MMP7P09237 267 aaPredicted RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 QDPRP09417 244 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 PGA4P0DJD7 388 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 PGA3P0DJD8 388 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 HIST1H1CP16403 213 aaKnown RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 CDAP32320 146 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 GGT2P36268 569 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 CDKN2AP42771 156 aaKnown RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 ADARB1P78563 741 aaKnown RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 EFNB1P98172 346 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 DEFA6Q01524 100 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 TOP3AQ13472 1001 aaPredicted RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 KLF17Q5JT82 389 aaPredicted RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 IQCF1Q8N6M8 205 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 DEFB108BQ8NET1 73 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 NANPQ8TBE9 248 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 FNDC8Q8TC99 324 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 TRUB1Q8WWH5 349 aaKnown RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 IPCEF1Q8WWN9 437 aaPredicted RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 CCL17Q92583 94 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 HDAC2Q92769 488 aaKnown RBP10.91□□□□□ -0.66
LINC00339-202ENST00000416769 ZNF566Q969W8 418 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 RBP7Q96R05 134 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 DDOQ99489 341 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 PITX2Q99697 317 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 GAL3ST1Q99999 423 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 ALG12Q9BV10 488 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 PRRG3Q9BZD7 231 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 RNF121Q9H920 327 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 SAP30LQ9HAJ7 183 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 CMC2Q9NRP2 79 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 TVP23BQ9NYZ1 205 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 ZNF69Q9UC07 566 aa10.91□□□□□ -0.66
LINC00339-202ENST00000416769 IGHV3OR16-10A0A075B7F0 116 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 ISPDA4D126 451 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 CLDN25C9JDP6 229 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 SURF4O15260 269 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 SLC2A10O95528 541 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 IFNGP01579 166 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 HKR1P10072 659 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 NR2C1P13056 603 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 CCNOP22674 350 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 CAPGP40121 348 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 HSPA13P48723 471 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 AQP4P55087 323 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 UCP2P55851 309 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 CDC42P60953 191 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 FMODQ06828 376 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.9□□□□□ -0.66
LINC00339-202ENST00000416769 KRR1Q13601 381 aaKnown RBP10.9□□□□□ -0.66
LINC00339-202ENST00000416769 SNAPC1Q16533 368 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 HIST3H3Q16695 136 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 TUSC1Q2TAM9 212 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 PDLIM3Q53GG5 364 aaPredicted RBP10.9□□□□□ -0.66
LINC00339-202ENST00000416769 MESTQ5EB52 335 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 THEM4Q5T1C6 240 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 SLC35F1Q5T1Q4 408 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 RFPL4BQ6ZWI9 263 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 ADCK1Q86TW2 530 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 SYT14Q8NB59 555 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 NPEPL1Q8NDH3 523 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 OR52E2Q8NGJ4 325 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 OR1J1Q8NGS3 322 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 OR4K13Q8NH42 304 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 AKR7LQ8NHP1 331 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 SNX33Q8WV41 574 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 TFAP2CQ92754 450 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 RASD2Q96D21 266 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 RAB39BQ96DA2 213 aa10.9□□□□□ -0.66
LINC00339-202ENST00000416769 JMJD8Q96S16 334 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms