RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TMEM130Q8N3G9 435 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 OR14J1Q9UGF5 321 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A1B0GV50 99 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF814B7Z6K7 855 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SCRG1O75711 98 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 CXCL10P02778 98 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PGA3P0DJD8 388 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SUB1P53999 127 aaKnown RBP eCLIP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 MOB3CQ70IA8 216 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 AAED1Q7RTV5 226 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF573Q86YE8 665 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 SECTM1Q8WVN6 248 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 MYEF2Q9P2K5 600 aaKnown RBP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 LILRA5A6NI73 299 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 NME2P22392 152 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 OTX2P32243 289 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 ZP2Q05996 745 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 BEX5Q5H9J7 111 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 PRR22Q8IZ63 422 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 BADQ92934 168 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 LRRC30A6NM36 301 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 CLDN1O95832 211 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 CST4P01036 141 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 C19orf57Q0VDD7 668 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 IL1F10Q8WWZ1 152 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 Q96M85 177 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 EDEM2Q9BV94 578 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 NXF2Q9GZY0 626 aaKnown RBP9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 COQ3Q9NZJ6 369 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 TIMM10BQ9Y5J6 103 aa9.36□□□□□ -0.91
CCDC88A-202ENST00000336838 RRASP10301 218 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CLDN17P56750 224 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 DCAF12Q5T6F0 453 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 LIPHQ8WWY8 451 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 PIGCQ92535 297 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 A0A087WUJ7 227 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 IFI6P09912 130 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 RAB4AP20338 218 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CARD18P57730 90 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CLDN2P57739 230 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 RPL18Q07020 188 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TBC1D28Q2M2D7 210 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 OR2AE1Q8NHA4 323 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TAS2R4Q9NYW5 299 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 AK3Q9UIJ7 227 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ATXN7L1Q9ULK2 861 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ASXL3Q9C0F0 2248 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 M0QYG6 137 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 POU2F2P09086 479 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF239Q16600 458 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 FAM111BQ6SJ93 734 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 OTOSQ8NHW6 89 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 SFT2D1Q8WV19 159 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CCL26Q9Y258 94 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 UPK1AO00322 258 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 P2RY10O00398 339 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 DUS4LO95620 317 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TBXA2RP21731 343 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ITGB8P26012 769 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 GPR3P46089 330 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TAS2R45P59539 299 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 RPUSD3Q6P087 351 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 OXGR1Q96P68 337 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TRAPPC2LQ9UL33 140 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TMED3Q9Y3Q3 217 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 HCFC2Q9Y5Z7 792 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TMEM202A6NGA9 273 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 DBHP09172 617 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 HRH1P35367 487 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CLINT1Q14677 625 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ZNF511Q8NB15 262 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 OR4D6Q8NGJ1 314 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 PPP1R1CQ8WVI7 109 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TMEM18Q96B42 140 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 SPSB1Q96BD6 273 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 SLAMF6Q96DU3 332 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ASB1Q9Y576 335 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 TMPRSS11DO60235 418 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ACSM4P0C7M7 580 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A6P0DMU7 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A5P0DMU8 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A7P0DMV0 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A8P0DMV1 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A9P0DMV2 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CD27P26842 260 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 ACOT6Q3I5F7 207 aaPredicted RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A2Q5DJT8 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A1Q5HYN5 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 OR4C16Q8NGL9 310 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 CT45A3Q8NHU0 189 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 FGF14Q92915 247 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 UTP23Q9BRU9 249 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 RAD52P43351 418 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 GSG1Q2KHT4 349 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 PTRH2Q9Y3E5 179 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 FLVCR1Q9Y5Y0 555 aa9.35□□□□□ -0.91
CCDC88A-202ENST00000336838 DVL1P1P54792 670 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 SNU13P55769 128 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 NTHL1P78549 312 aa9.34□□□□□ -0.91
CCDC88A-202ENST00000336838 C1orf61Q13536 156 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms