RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 CT45A5P0DMU8 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A7P0DMV0 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A8P0DMV1 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A9P0DMV2 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 HNF4GQ14541 408 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A2Q5DJT8 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A1Q5HYN5 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CT45A3Q8NHU0 189 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CDCA4Q9BXL8 241 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 SLC22A13Q9Y226 551 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 C17orf112F2Z3M2 114 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 RAB1AP62820 205 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 GNB2P62879 340 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 KANSL1Q7Z3B3 1105 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 MDGA2Q7Z553 956 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 FAM185AQ8N0U4 392 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 APOBEC3DQ96AK3 386 aaPredicted RBP16.74■□□□□ 0.27
PCDH1-201ENST00000287008 GPR87Q9BY21 358 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF71Q9NQZ8 489 aaPredicted RBP16.74■□□□□ 0.27
PCDH1-201ENST00000287008 JUNBP17275 347 aaPredicted RBP16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ANXA7P20073 488 aaKnown RBP16.74■□□□□ 0.27
PCDH1-201ENST00000287008 PLA2G7Q13093 441 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 DOC2BQ14184 412 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 CLPPQ16740 277 aaPredicted RBP16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ANKRD34AQ69YU3 496 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF425Q6IV72 752 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 PBOV1Q9GZY1 135 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 HIF1ANQ9NWT6 349 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 A3GALT2U3KPV4 340 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ALG1L2C9J202 215 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 SIRPB1O00241 398 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 TCRBP04435 133 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF74Q16587 644 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 TAF9Q16594 264 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 SLC25A26Q70HW3 274 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 GCNT2Q8N0V5 402 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 AMER3Q8N944 861 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 MALSU1Q96EH3 234 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 S1PR3Q99500 378 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 ING1Q9UK53 422 aaPredicted RBP16.74■□□□□ 0.27
PCDH1-201ENST00000287008 UGT2A1Q9Y4X1 527 aa16.74■□□□□ 0.27
PCDH1-201ENST00000287008 BMP5P22003 454 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 CA5BP1Q8WTZ4 195 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 KTI12Q96EK9 354 aaPredicted RBP16.73■□□□□ 0.27
PCDH1-201ENST00000287008 SCPEP1Q9HB40 452 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF225Q9UK10 706 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 FAM96BQ9Y3D0 163 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 SHISA8B8ZZ34 492 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 MAGEB4O15481 346 aaPredicted RBP16.73■□□□□ 0.27
PCDH1-201ENST00000287008 WDR1O75083 606 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 CCL4P13236 92 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 RPS19P39019 145 aaKnown RBP16.73■□□□□ 0.27
PCDH1-201ENST00000287008 AQP6Q13520 282 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 NOXO1Q8NFA2 376 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 APOBEC4Q8WW27 367 aaKnown RBP16.73■□□□□ 0.27
PCDH1-201ENST00000287008 SMIM19Q96E16 107 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 MOSPD3O75425 235 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 TNFRSF1AP19438 455 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 SRP9P49458 86 aaKnown RBP16.73■□□□□ 0.27
PCDH1-201ENST00000287008 RAB5BP61020 215 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF117Q03924 483 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 CDK5R1Q15078 307 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF674Q2M3X9 581 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 UBR3Q6ZT12 1888 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 DDOSTP39656 456 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 SOWAHCQ53LP3 525 aaPredicted RBP16.73■□□□□ 0.27
PCDH1-201ENST00000287008 PRAMEF5Q5TYX0 476 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 PRAMEF6Q5VXH4 476 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 PAQR6Q6TCH4 344 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 ZNF321PQ8N8H1 164 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 MMP25Q9NPA2 562 aa16.73■□□□□ 0.27
PCDH1-201ENST00000287008 POLR2AP24928 1970 aaKnown RBP16.72■□□□□ 0.27
PCDH1-201ENST00000287008 PATE3B3GLJ2 98 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 PRR35P0CG20 571 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 PCSK6P29122 969 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 GSK3AP49840 483 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 TOMM34Q15785 309 aaPredicted RBP16.72■□□□□ 0.27
PCDH1-201ENST00000287008 WDR74Q6RFH5 385 aaPredicted RBP16.72■□□□□ 0.27
PCDH1-201ENST00000287008 SLC38A9Q8NBW4 561 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 OR10X1Q8NGY0 326 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 HPSE2Q8WWQ2 592 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 FRZBQ92765 325 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 DUS3LQ96G46 650 aaKnown RBP16.72■□□□□ 0.27
PCDH1-201ENST00000287008 DUSP21Q9H596 190 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 OPA3Q9H6K4 179 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 A0A0D9SG52 128 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 TGM6O95932 706 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 HAAOP46952 286 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 CST9LP1Q5W188 147 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 OTPQ5XKR4 325 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 RFPL4BQ6ZWI9 263 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 TAS2R5Q9NYW4 299 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 FBXL2Q9UKC9 423 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 CHST2Q9Y4C5 530 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 SPAARA0A1B0GVQ0 90 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 IMPA2O14732 288 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 RAB6AP20340 208 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 RAB13P51153 203 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 KIAA0040Q15053 153 aa16.72■□□□□ 0.27
PCDH1-201ENST00000287008 GSG1Q2KHT4 349 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms