RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 OR2T33Q8NG76 320 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SH3RF2Q8TEC5 729 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 MUCL1Q96DR8 90 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SPACA9Q96E40 222 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 INSM2Q96T92 566 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 KLHDC3Q9BQ90 382 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HAPLN2Q9GZV7 340 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 PLK3Q9H4B4 646 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SIRT3Q9NTG7 399 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SIDT1Q9NXL6 827 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HDGFL3Q9Y3E1 203 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SIPA1L1O43166 1804 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 C5P01031 1676 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 IFNA1P01562 189 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HBE1P02100 147 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 MRPL3P09001 348 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CALCBP10092 127 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CXCL8P10145 99 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ITGB5P18084 799 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SDC1P18827 310 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HTR1FP30939 366 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 KHKP50053 298 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 HTD2P86397 168 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 DHRS2Q13268 280 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TPTE2P1Q5T6R2 138 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TEX38Q6PEX7 206 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 DPY19L4Q7Z388 723 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 DVL3Q92997 716 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TSLPQ969D9 159 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ERGIC1Q969X5 290 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 C4orf36Q96KX1 117 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 SLC25A18Q9H1K4 315 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 CDT1Q9H211 546 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 ADGRL4Q9HBW9 690 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 OR6C3Q9NZP0 311 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 TESQ9UGI8 421 aaKnown RBP5.22□□□□□ -1.57
SCN1A-216ENST00000637968 IL36AQ9UHA7 158 aa5.22□□□□□ -1.57
SCN1A-216ENST00000637968 RGPD8O14715 1765 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 RGPD5Q99666 1765 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 A0A087WWC5 75 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 A0A1B0GTL3 188 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 RNF222A6NCQ9 220 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 IFITM10A6NMD0 228 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 F5H5T6 163 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 FGF10O15520 208 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF207O43670 478 aaKnown RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 SRPX2O60687 465 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 DUSP11O75319 330 aaKnown RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 SLC16A8O95907 504 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 ACP5P13686 325 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 GLB1P16278 677 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 TAL1P17542 331 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 ELAVL4P26378 380 aaKnown RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 RABIFP47224 123 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 LCN6P62502 163 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 HLA-DRB3P79483 266 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 UGCGQ16739 394 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 C2orf68Q2NKX9 166 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 SIRPB2Q5JXA9 342 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 TRNP1Q6NT89 227 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 RPL22L1Q6P5R6 122 aaKnown RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 DPPA3Q6W0C5 159 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 LBX2Q6XYB7 198 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM192Q8IY95 271 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 DND1Q8IYX4 353 aaKnown RBP5.21□□□□□ -1.57
SCN1A-216ENST00000637968 SLC39A11Q8N1S5 342 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 FAM89BQ8N5H3 189 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 ARIH2OSQ8N7S6 290 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 CHST4Q8NCG5 386 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 STXBP6Q8NFX7 210 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 IGSF21Q96ID5 467 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 MRGPRX3Q96LB0 322 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 KXD1Q9BQD3 176 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 GPR174Q9BXC1 333 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 WDR13Q9H1Z4 485 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 SLC6A13Q9NSD5 602 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 RNF150Q9ULK6 438 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 LAMTOR2Q9Y2Q5 125 aa5.21□□□□□ -1.57
SCN1A-216ENST00000637968 ARFGEF2Q9Y6D5 1785 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TRBV5-3A0A0A0MS03 114 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TNFSF13O75888 250 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 PNLIPP16233 465 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 GZMMP51124 257 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 FBXW4P57775 412 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 CKS1BP61024 79 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 ZXDBP98169 803 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF92Q03936 586 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 PNRC1Q12796 327 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-216ENST00000637968 LY6KQ17RY6 165 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 RPL7L1Q6DKI1 246 aaKnown RBP5.21□□□□□ -1.58
SCN1A-216ENST00000637968 FAM151BQ6UXP7 276 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 SLC25A26Q70HW3 274 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TEX26Q8N6G2 289 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 ADAMTS18Q8TE60 1221 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 MIB2Q96AX9 1013 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 C1QTNF3Q9BXJ4 246 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 BCO2Q9BYV7 579 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 P2RY12Q9H244 342 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 FBRSQ9HAH7 460 aa5.21□□□□□ -1.58
SCN1A-216ENST00000637968 TXNRD2Q9NNW7 524 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms