RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NUAK2Q9H093 628 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 WDR76Q9H967 626 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 TMEM165Q9HC07 324 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 OR5V1Q9UGF6 321 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 IER3IP1Q9Y5U9 82 aa13.55□□□□□ -0.24
CLN3-246ENST00000636228 SURF4O15260 269 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 WNT2P09544 360 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 RAC2P15153 192 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 SELEP16581 610 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 TUBG1P23258 451 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 CDKN2AP42771 156 aaKnown RBP13.54□□□□□ -0.24
CLN3-246ENST00000636228 PAX8Q06710 450 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 FAM201AQ5SY85 155 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 SHISA2Q6UWI4 295 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 GLB1L2Q8IW92 636 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 BHLHE23Q8NDY6 225 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 OR52E2Q8NGJ4 325 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 MEGF10Q96KG7 1140 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 GPA33Q99795 319 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 MS4A7Q9GZW8 240 aaPredicted RBP13.54□□□□□ -0.24
CLN3-246ENST00000636228 NRIP3Q9NQ35 241 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 TUBG2Q9NRH3 451 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 MRGBPQ9NV56 204 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 SIGLEC7Q9Y286 467 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 MEGF8Q7Z7M0 2845 aa13.54□□□□□ -0.24
CLN3-246ENST00000636228 A8MXK9 166 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 F5H5P2 479 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 DCTN6O00399 190 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 AHCYL1O43865 530 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 NDUFB2O95178 105 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 COX4I1P13073 169 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 SDHAP31040 664 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 GSK3BP49841 420 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 FXYD6P3P58550 94 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 LSM6P62312 80 aaKnown RBP13.53□□□□□ -0.24
CLN3-246ENST00000636228 FGD3Q5JSP0 725 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 CORO6Q6QEF8 472 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 MOGAT3Q86VF5 341 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 KLBQ86Z14 1044 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 FAM156AQ8NDB6 213 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 OR8G5Q8NG78 346 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 FAM162AQ96A26 154 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 COG8Q96MW5 612 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 ZNF582Q96NG8 517 aaPredicted RBP13.53□□□□□ -0.24
CLN3-246ENST00000636228 UNKLQ9H9P5 680 aaKnown RBP13.53□□□□□ -0.24
CLN3-246ENST00000636228 ZNF446Q9NWS9 450 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 VSX1Q9NZR4 365 aaPredicted RBP13.53□□□□□ -0.24
CLN3-246ENST00000636228 POLR1DQ9Y2S0 133 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 ENPP4Q9Y6X5 453 aa13.53□□□□□ -0.24
CLN3-246ENST00000636228 MDFIC2A0A1B0GVS7 189 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 DYNC1I1O14576 645 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 MLNRO43193 412 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 DIRAS1O95057 198 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 HLA-DPB1P04440 258 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 RPS2P15880 293 aaKnown RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 PMELP40967 661 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 HOXA4Q00056 320 aaPredicted RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 PAX2Q02962 417 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 SEC23BQ15437 767 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 SLC9A3R2Q15599 337 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 RSPO1Q2MKA7 263 aaPredicted RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 PRR31Q5SQ13 230 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 FBXW12Q6X9E4 464 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 CYP4Z1Q86W10 505 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 MUC20Q8N307 709 aaPredicted RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 PARP8Q8N3A8 854 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 C19orf18Q8NEA5 215 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 OR13G1Q8NGZ3 307 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 OR52J3Q8NH60 311 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 RP9Q8TA86 221 aaKnown RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 RSRC1Q96IZ7 334 aaKnown RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 TMEM246Q9BRR3 403 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 SSBP3Q9BWW4 388 aaPredicted RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 SRA1Q9HD15 236 aaKnown RBP13.52□□□□□ -0.25
CLN3-246ENST00000636228 RPS6KA6Q9UK32 745 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 TMEM5Q9Y2B1 443 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 LHFPL6Q9Y693 200 aa13.52□□□□□ -0.25
CLN3-246ENST00000636228 WNK2Q9Y3S1 2297 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 TRBV4-1A0A0J9YWV2 114 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 H1F0P07305 194 aaKnown RBP13.51□□□□□ -0.25
CLN3-246ENST00000636228 RNASE1P07998 156 aaKnown RBP13.51□□□□□ -0.25
CLN3-246ENST00000636228 OMPP47874 163 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 RGS6P49758 472 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 GNB2P62879 340 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 GPR139Q6DWJ6 353 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 SLC27A4Q6P1M0 643 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 ARPINQ7Z6K5 226 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 NAA40Q86UY6 237 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 OR5L1Q8NGL2 311 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 NDEL1Q9GZM8 345 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 NDUFAF4Q9P032 175 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 LRCH1Q9Y2L9 728 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 AP3M1Q9Y2T2 418 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 TANC2Q9HCD6 1990 aa13.51□□□□□ -0.25
CLN3-246ENST00000636228 TRRAPQ9Y4A5 3859 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 IGHV2-70DA0A0C4DH43 119 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 A0A1W2PRQ8 180 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 UNC119BA6NIH7 251 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 PPP1R3DO95685 299 aa13.5□□□□□ -0.25
CLN3-246ENST00000636228 OMGP23515 440 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms