RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 HTR1FP30939 366 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 NPY4RP50391 375 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 DUSP5Q16690 384 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ENTPD8Q5MY95 495 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 CPTPQ5TA50 214 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PRAMEF17Q5VTA0 474 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 AWAT2Q6E213 333 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR8U1Q8NH10 309 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 PPP1R16AQ96I34 528 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 DERL3Q96Q80 235 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 COMMD4Q9H0A8 199 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 EGLN3Q9H6Z9 239 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 KCNG2Q9UJ96 466 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ZNF223Q9UK11 482 aaPredicted RBP9.23□□□□□ -0.93
VPS39-214ENST00000614932 OR52A1Q9UKL2 312 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 AMDHD2Q9Y303 409 aa9.23□□□□□ -0.93
VPS39-214ENST00000614932 ZNF106Q9H2Y7 1883 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 HELZP42694 1942 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 KIR2DL5BA0A0G2JN68 375 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 KIR2DL5BA0A0G2JPC4 375 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 A0A1W2PPK0 400 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 IGLON5A6NGN9 336 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PRAMEF26H0Y7S4 382 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 SMAD9O15198 467 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 CCL25O15444 150 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 CYB5BO43169 146 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 ARL6IP5O75915 188 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 TBX6O95947 436 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 RAB40ALP0C0E4 278 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PGA3P0DJD8 388 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 GSTM3P21266 225 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 DTYMKP23919 212 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PSMB5P28074 263 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 RAE1P78406 368 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 HNRNPA1L2Q32P51 320 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 ZNF585AQ6P3V2 769 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PODNL1Q6PEZ8 512 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 SLC35D2Q76EJ3 337 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 OVCH1Q7RTY7 1134 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 NUP54Q7Z3B4 507 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 SLC35E3Q7Z769 313 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 GKN2Q86XP6 184 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 KIR2DL5AQ8N109 375 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 SIRT6Q8N6T7 355 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 OR4K5Q8NGD3 323 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 OR4K14Q8NGD5 310 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 RAB40AQ8WXH6 277 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 DCUN1D4Q92564 292 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 ADAD1Q96M93 576 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 STACQ99469 402 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 NKX3-1Q99801 234 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 KXD1Q9BQD3 176 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 G6PC3Q9BUM1 346 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 TCEAL2Q9H3H9 227 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 GSKIPQ9P0R6 139 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 LUZP4Q9P127 313 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 FARSAQ9Y285 508 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 NOP16Q9Y3C1 178 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 MGAT4DA6NG13 374 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 DHRS7CA6NNS2 312 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 J3QRE1 110 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 J3QW42 95 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 LRP3O75074 770 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 OR2J2O76002 312 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PRNPP04156 253 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 ITGB2P05107 769 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 MMP7P09237 267 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 HNRNPA1P09651 372 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS39-214ENST00000614932 SULT1A2P50226 295 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 TAS2R43P59537 309 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 IQCJQ1A5X6 159 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 GAB4Q2WGN9 574 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PRAMEF14Q5SWL7 426 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 COL5A1-AS1Q5SY13 56 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 TRIM40Q6P9F5 258 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 DNM1P46Q6ZS02 220 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 FCRLAQ7L513 359 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 NUFIP2Q7Z417 695 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 LSRQ86X29 649 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 LINC00471Q8N535 108 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 THAP3Q8WTV1 239 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 SUSD6Q92537 303 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 GPA33Q99795 319 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 ALKBH7Q9BT30 221 aaPredicted RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 RPP25Q9BUL9 199 aaKnown RBP9.22□□□□□ -0.93
VPS39-214ENST00000614932 SLC17A9Q9BYT1 436 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 PLA2G2FQ9BZM2 168 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 OR8D2Q9GZM6 311 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 OR51I1Q9H343 314 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 CUTCQ9NTM9 273 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 C5AR2Q9P296 337 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 SERGEFQ9UGK8 458 aa9.22□□□□□ -0.93
VPS39-214ENST00000614932 AKAIN1P0CW23 69 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 NPPBP16860 134 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 HLA-GP17693 338 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 BCKDHBP21953 392 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 CDK2P24941 298 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 DPP4P27487 766 aa9.21□□□□□ -0.93
VPS39-214ENST00000614932 PTGER1P34995 402 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms