RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GLO1Q04760 184 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 KCNMB1Q16558 191 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 NKPD1Q17RQ9 610 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 PABPC1L2AQ5JQF8 200 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 ZNF362Q5T0B9 420 aaPredicted RBP10.65□□□□□ -0.7
UPF1-203ENST00000594504 SLC27A4Q6P1M0 643 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 PARP8Q8N3A8 854 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 ICA1LQ8NDH6 482 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 SLC30A7Q8NEW0 376 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 OR1J2Q8NGS2 313 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 DDOQ99489 341 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 GABARAPL1Q9H0R8 117 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 SRA1Q9HD15 236 aaKnown RBP10.65□□□□□ -0.7
UPF1-203ENST00000594504 EMC7Q9NPA0 242 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 PAPOLBQ9NRJ5 636 aaKnown RBP10.65□□□□□ -0.7
UPF1-203ENST00000594504 CMC2Q9NRP2 79 aa10.65□□□□□ -0.7
UPF1-203ENST00000594504 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.64□□□□□ -0.716e-10■■■□□ 15
UPF1-203ENST00000594504 C17orf100A8MU93 164 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 H3BNX3 289 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 SNAP29O95721 258 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 AVPP01185 164 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 MSMBP08118 114 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 ZNF3P17036 446 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 APLNRP35414 380 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 CENPAP49450 140 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 DAPP51397 102 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 TMEM33P57088 247 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 RPS23P62266 143 aaKnown RBP10.64□□□□□ -0.71
UPF1-203ENST00000594504 PSG4Q00888 419 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 SCRN3Q0VDG4 424 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 AQP6Q13520 282 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 CRMP1Q14194 572 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 GINS1Q14691 196 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 TBC1D28Q2M2D7 210 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 FAHD2BQ6P2I3 314 aaPredicted RBP10.64□□□□□ -0.71
UPF1-203ENST00000594504 UGT2A3Q6UWM9 527 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 C1orf229Q6ZS94 237 aaPredicted RBP10.64□□□□□ -0.71
UPF1-203ENST00000594504 ALDH16A1Q8IZ83 802 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 IQCF1Q8N6M8 205 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 CYB561A3Q8NBI2 242 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 SLC37A3Q8NCC5 494 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 OR2T4Q8NH00 348 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 SYNPRQ8TBG9 265 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 C11orf40Q8WZ69 217 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 FAHD2AQ96GK7 314 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 RBM4Q9BWF3 364 aaKnown RBP10.64□□□□□ -0.71
UPF1-203ENST00000594504 OR2H1Q9GZK4 316 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 WNT5BQ9H1J7 359 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 SEMA6AQ9H2E6 1030 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 FN3KQ9H479 309 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 CDH20Q9HBT6 801 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 CACNG2Q9Y698 323 aa10.64□□□□□ -0.71
UPF1-203ENST00000594504 MPZL1O95297 269 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 HMGN1P05114 100 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 ZNF250P15622 560 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 CCNOP22674 350 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 STOMP27105 288 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 RBMXP38159 391 aaKnown RBP10.63□□□□□ -0.71
UPF1-203ENST00000594504 SLC25A1P53007 311 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 UCP2P55851 309 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 ESRRGP62508 458 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 CDK5Q00535 292 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 HNRNPA0Q13151 305 aaKnown RBP10.63□□□□□ -0.71
UPF1-203ENST00000594504 ZSCAN26Q16670 478 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 TSTQ16762 297 aaKnown RBP10.63□□□□□ -0.71
UPF1-203ENST00000594504 KDM4DQ6B0I6 523 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 C12orf54Q6X4T0 127 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 CPEB3Q8NE35 698 aaKnown RBP10.63□□□□□ -0.71
UPF1-203ENST00000594504 PROKR2Q8NFJ6 384 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 SLC26A10Q8NG04 563 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 AKR7LQ8NHP1 331 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 PKP2Q99959 881 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 OSBPL10Q9BXB5 764 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 TEX12Q9BXU0 123 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 NMNAT2Q9BZQ4 307 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 SLC25A19Q9HC21 320 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 HINT3Q9NQE9 182 aaKnown RBP10.63□□□□□ -0.71
UPF1-203ENST00000594504 KRT84Q9NSB2 600 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 ASH2LQ9UBL3 628 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 ENOPH1Q9UHY7 261 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 OAZ3Q9UMX2 235 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 POLR1DQ9Y2S0 133 aa10.63□□□□□ -0.71
UPF1-203ENST00000594504 IGLV3-9A0A075B6K5 115 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 SGCEO43556 437 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 GPANK1O95872 356 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 HLA-DQA2P01906 255 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 TFP02787 698 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 COX5BP10606 129 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 PCMT1P22061 227 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 PAICSP22234 425 aaKnown RBP10.62□□□□□ -0.71
UPF1-203ENST00000594504 CFPP27918 469 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 PYCR1P32322 319 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 GDI2P50395 445 aaKnown RBP10.62□□□□□ -0.71
UPF1-203ENST00000594504 CRISP1P54107 249 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 KLF3P57682 345 aaPredicted RBP10.62□□□□□ -0.71
UPF1-203ENST00000594504 TEKQ02763 1124 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 MEP1BQ16820 701 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 TMEM255AQ5JRV8 349 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 ACSM5Q6NUN0 579 aa10.62□□□□□ -0.71
UPF1-203ENST00000594504 ZNF774Q6NX45 483 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms