RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 CELF2-AS1Q8N7Q2 184 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 ICA1LQ8NDH6 482 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 SLC26A10Q8NG04 563 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 OR2T33Q8NG76 320 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 OR13G1Q8NGZ3 307 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 OR51F2Q8NH61 342 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 BCAS4Q8TDM0 211 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 SPTSSAQ969W0 71 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 ERGIC1Q969X5 290 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 GPA33Q99795 319 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 OR2J1Q9GZK6 312 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 MMADHCQ9H3L0 296 aaPredicted RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 TPK1Q9H3S4 243 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 OPA3Q9H6K4 179 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 SRA1Q9HD15 236 aaKnown RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 ZNF275Q9NSD4 429 aaPredicted RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 CYB5R1Q9UHQ9 305 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 TMEFF2Q9UIK5 374 aaPredicted RBP8.94□□□□□ -0.98
LIG3-212ENST00000590181 GRIP1Q9Y3R0 1128 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 TGP01266 2768 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 PKD1L1Q8TDX9 2849 aa8.94□□□□□ -0.98
LIG3-212ENST00000590181 DYSFO75923 2080 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 PPIAL4EA0A075B759 164 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 A0A0A6YYJ9 748 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 TRAV20A0A0B4J274 112 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 PPIAL4CA0A0B4J2A2 164 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 PPIAL4DF5H284 164 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 H7C1C5 153 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 J3QLI3 93 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 BHLHE40O14503 412 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 ACOT8O14734 319 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 GYG2O15488 501 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 TIMM8AO60220 97 aaPredicted RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 PPP1R3DO95685 299 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 PPIAL4FP0DN26 164 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 T-ENOLP0DO92 83 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 COL8A2P25067 703 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 MSX2P35548 267 aaPredicted RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 SLC25A1P53007 311 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 TPTEP56180 551 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 LCN6P62502 163 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 MALLQ13021 153 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 PSG7Q13046 419 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 ACSM5Q6NUN0 579 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 CYP2R1Q6VVX0 501 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 COLCA1Q6ZS62 124 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 PTCHD4Q6ZW05 846 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 LSRQ86X29 649 aaPredicted RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 MEX3DQ86XN8 651 aaKnown RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 NRBF2Q96F24 287 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 NMNAT3Q96T66 252 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 ATF6BQ99941 703 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 BTBD10Q9BSF8 475 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 HCAR1Q9BXC0 346 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 C1QTNF5Q9BXJ0 243 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 RERGLQ9H628 205 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 ZNF556Q9HAH1 456 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 EMC7Q9NPA0 242 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 RPRD1BQ9NQG5 326 aaKnown RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 MYEF2Q9P2K5 600 aaKnown RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 PURGQ9UJV8 347 aaKnown RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 FZR1Q9UM11 496 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 SAMHD1Q9Y3Z3 626 aaKnown RBP8.93□□□□□ -0.98
LIG3-212ENST00000590181 V9GYQ6 96 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 WNK2Q9Y3S1 2297 aa8.93□□□□□ -0.98
LIG3-212ENST00000590181 RIIAD1A6NNX1 92 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 GNGT2O14610 69 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 CST1P01037 141 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 NGFP01138 241 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 GASTP01350 101 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 IGHV1-46P01743 117 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 HLA-DQA2P01906 255 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 HMGN1P05114 100 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 GAAP10253 952 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 ZNF3P17036 446 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 PAICSP22234 425 aaKnown RBP8.92□□□□□ -0.98
LIG3-212ENST00000590181 FMO3P31513 532 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 SLC15A1P46059 708 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 SRP9P49458 86 aaKnown RBP8.92□□□□□ -0.98
LIG3-212ENST00000590181 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIG3-212ENST00000590181 MZT1Q08AG7 82 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 MAD2L1BPQ15013 274 aaPredicted RBP8.92□□□□□ -0.98
LIG3-212ENST00000590181 SNCBQ16143 134 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 PCK2Q16822 640 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 ZNF181Q2M3W8 571 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 KRTAP27-1Q3LI81 207 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 CCDC92Q53HC0 331 aaPredicted RBP8.92□□□□□ -0.98
LIG3-212ENST00000590181 LIPNQ5VXI9 398 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 USP51Q70EK9 711 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 KLBQ86Z14 1044 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 PLPP7Q8NBV4 271 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 OR8G5Q8NG78 346 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 OR52E2Q8NGJ4 325 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 OR4K13Q8NH42 304 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 GIPC3Q8TF64 312 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 CMBLQ96DG6 245 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 ZNF582Q96NG8 517 aaPredicted RBP8.92□□□□□ -0.98
LIG3-212ENST00000590181 DDOQ99489 341 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 THTPAQ9BU02 230 aa8.92□□□□□ -0.98
LIG3-212ENST00000590181 CHID1Q9BWS9 393 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms