RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 ATP5SQ99766 215 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 MICU1Q9BPX6 476 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 ZSCAN16Q9H4T2 348 aaPredicted RBP1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 TMEM9BQ9NQ34 198 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 SUN2Q9UH99 717 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 NUP50Q9UKX7 468 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 PALLDQ8WX93 1383 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 SCN4AP35499 1836 aa1.28□□□□□ -2.2
SMCHD1-206ENST00000581631 IGHV3-49A0A0A0MS15 119 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 IGKV1-8A0A0C4DH67 115 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 OR5H1A6NKK0 313 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 LRRIQ3A6PVS8 624 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 KRBOX1C9JBD0 128 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 NDUFC2-KCTD14E9PQ53 114 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 SURF6O75683 361 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 CNMDO75829 334 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 SEMA3DO95025 777 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 IGHV3-11P01762 117 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 SERPINA5P05154 406 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 ERGP11308 486 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 PSMB5P28074 263 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 GFERP55789 205 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 RPL23P62829 140 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 GPM6BQ13491 265 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 ZNF235Q14590 738 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 ZNF726P1Q15940 193 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 GPR107Q5VW38 600 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 HCP5Q6MZN7 132 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 C16orf47Q6ZP98 133 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 Q6ZSR3 168 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 ADM2Q7Z4H4 148 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 SLC35G3Q8N808 338 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 DCPSQ96C86 337 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 CCDC126Q96EE4 140 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 ZFP3Q96NJ6 502 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 TM2D3Q9BRN9 247 aa1.27□□□□□ -2.21
SMCHD1-206ENST00000581631 IGHV3-72A0A0B4J1Y9 119 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 IGHV1-3A0A0C4DH29 117 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 ARHGEF35A5YM69 484 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 CEACAM18A8MTB9 384 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 H7C417 338 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 EIF1BO60739 113 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 GLSO94925 669 aaPredicted RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 PAHP00439 452 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 ACSM4P0C7M7 580 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 MCF2P10911 925 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 ZNF43P17038 809 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 MX1P20591 662 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 EIF1P41567 113 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 NSG1P42857 185 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 SYKP43405 635 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 ADARB1P78563 741 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 PRR3P79522 188 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 BST2Q10589 180 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 RBMY1FQ15415 496 aaKnown RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 LRRC23Q53EV4 343 aaPredicted RBP1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 YIF1BQ5BJH7 314 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 FBXL13Q8NEE6 735 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 OR5T1Q8NG75 326 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 OR11H7Q8NGC8 314 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 GPR151Q8TDV0 419 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 MTFP1Q9UDX5 166 aa1.26□□□□□ -2.21
SMCHD1-206ENST00000581631 J3QRE1 110 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 MANBAO00462 879 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 KLHL41O60662 606 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 KLHL2O95198 593 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 TSPAN13O95857 204 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 LHBP01229 141 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 U2AF2P26368 475 aaKnown RBP eCLIP1.25□□□□□ -2.212e-7■■■■□ 20.8
SMCHD1-206ENST00000581631 TMED10P49755 219 aaKnown RBP1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 HNMTP50135 292 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 GBX2P52951 348 aaPredicted RBP1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 CHIT1Q13231 466 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 DMC1Q14565 340 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 PGGHGQ32M88 737 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 VPS26BQ4G0F5 336 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 SASS6Q6UVJ0 657 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 TMEM150AQ86TG1 271 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 CSGALNACT2Q8N6G5 542 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 NPWQ8N729 165 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 ZNF645Q8N7E2 425 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 PRELID2Q8N945 189 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 CHST4Q8NCG5 386 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 TMEM230Q96A57 120 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 TUBGCP3Q96CW5 907 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 SLC29A1Q99808 456 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 NEK6Q9HC98 313 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 RHBDL2Q9NX52 303 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 SEC16AO15027 2179 aa1.25□□□□□ -2.21
SMCHD1-206ENST00000581631 SDK2Q58EX2 2172 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 ANKRD12Q6UB98 2062 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 ARPC4-TTLL3A0A0A6YYG9 625 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 RAB29O14966 203 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 CDC40O60508 579 aaKnown RBP eCLIP1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 EIF4E2O60573 245 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 FKBP6O75344 327 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 PALMO75781 387 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 CHMLP26374 656 aa1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 TAGLN2P37802 199 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-206ENST00000581631 RBM34P42696 430 aaKnown RBP1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms