RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DCLRE1CQ96SD1 692 aaKnown RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 OR2J1Q9GZK6 312 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 EGLN1Q9GZT9 426 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 HDHD2Q9H0R4 259 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 EGLN3Q9H6Z9 239 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 RPRD1BQ9NQG5 326 aaKnown RBP6.93□□□□□ -1.3
VPS53-214ENST00000572607 TUBG2Q9NRH3 451 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 TBCCD1Q9NVR7 557 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 FAM53CQ9NYF3 392 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 LPAR3Q9UBY5 353 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 KCNS2Q9ULS6 477 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 BAIAP2Q9UQB8 552 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 U3KQV3 271 aa6.93□□□□□ -1.3
VPS53-214ENST00000572607 HEATR1Q9H583 2144 aaKnown RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 IGHV4-61A0A0C4DH41 118 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 LOC100289279A0A1B0GTE1 492 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 OR6C6A6NF89 314 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 H3BN98 237 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 J3QW42 95 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 SPRY3O43610 288 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 TIMM8AO60220 97 aaPredicted RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 ICMTO60725 284 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 E2F6O75461 281 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 CRLF1O75462 422 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 DNAJC8O75937 253 aaPredicted RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 MPZL1O95297 269 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 CST1P01037 141 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 GASTP01350 101 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 IFNGP01579 166 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 IGHV3-13P01766 116 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 SCG5P05408 212 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 IGHV4-31P0DP07 118 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 GAAP10253 952 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 HNF1AP20823 631 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 MAGEB1P43366 347 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 RASSF2P50749 326 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 TMEM33P57088 247 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 PPP1R8Q12972 351 aaKnown RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 KCNMB1Q16558 191 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 TSTQ16762 297 aaKnown RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 CHRFAM7AQ494W8 412 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 ELFN2Q5R3F8 820 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 MBNL2Q5VZF2 373 aaKnown RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 FAM166AQ6J272 317 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 PROKR2Q8NFJ6 384 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 OR2T33Q8NG76 320 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 OR5L1Q8NGL2 311 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 OR2T4Q8NH00 348 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 TEX47Q8TBZ9 253 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 KLF14Q8TD94 323 aaPredicted RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 ELMOD3Q96FG2 381 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 MARS2Q96GW9 593 aaKnown RBP6.92□□□□□ -1.3
VPS53-214ENST00000572607 TSSK2Q96PF2 358 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 DIRC2Q96SL1 478 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 COQ7Q99807 217 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 BTBD10Q9BSF8 475 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 CHID1Q9BWS9 393 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 TSSK6Q9BXA6 273 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 ZNF556Q9HAH1 456 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 SAP30LQ9HAJ7 183 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 NKIRAS2Q9NYR9 191 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 ATPIF1Q9UII2 106 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 KCNG2Q9UJ96 466 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 KLHL21Q9UJP4 597 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 CDC42EP3Q9UKI2 254 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 GRIP1Q9Y3R0 1128 aa6.92□□□□□ -1.3
VPS53-214ENST00000572607 ALPK2Q86TB3 2170 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 IGLV1-36A0A0B4J1U3 117 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 LRP5LA4QPB2 252 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 RIIAD1A6NNX1 92 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 LYNX1G3V0Z9 82 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ACOT8O14734 319 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 RER1O15258 196 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 PPIHO43447 177 aaKnown RBP6.91□□□□□ -1.3
VPS53-214ENST00000572607 LMX1BO60663 402 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ATP5HO75947 161 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 TGFAP01135 160 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 IFNA2P01563 188 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 IGFBP1P08833 259 aaPredicted RBP6.91□□□□□ -1.3
VPS53-214ENST00000572607 TACSTD2P09758 323 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 LYNX1P0DP58 116 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ZNF3P17036 446 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 PCMT1P22061 227 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 TNFSF4P23510 183 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 MPV17P39210 176 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 BLVRAP53004 296 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 CCL8P80075 99 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 SLC3A1Q07837 685 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 COX10Q12887 443 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ECH1Q13011 328 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 RIN1Q13671 783 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 MEP1BQ16820 701 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 HFEQ30201 348 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 CCDC92Q53HC0 331 aaPredicted RBP6.91□□□□□ -1.3
VPS53-214ENST00000572607 OTPQ5XKR4 325 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ZNF770Q6IQ21 691 aaPredicted RBP6.91□□□□□ -1.3
VPS53-214ENST00000572607 USP51Q70EK9 711 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ZBTB46Q86UZ6 589 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 ADGRG5Q8IZF4 528 aa6.91□□□□□ -1.3
VPS53-214ENST00000572607 OR6V1Q8N148 313 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms