RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 KCNE5Q9UJ90 142 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 HDGFL3Q9Y3E1 203 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 TMED3Q9Y3Q3 217 aa9.8□□□□□ -0.84
CLK3-226ENST00000569406 PCYT1BQ9Y5K3 369 aaPredicted RBP9.8□□□□□ -0.84
CLK3-226ENST00000569406 OTOL1A6NHN0 477 aaPredicted RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 TSPAN6O43657 245 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 LEFTY1O75610 366 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 ATP1B1P05026 303 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 CISD3P0C7P0 127 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 MTNR1AP48039 350 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 DUSP5Q16690 384 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 ZNF468Q5VIY5 522 aaPredicted RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 VWA1Q6PCB0 445 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 SFTPA1Q8IWL2 248 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 OR4K15Q8NH41 348 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 Q8WTZ3 238 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 IRF7Q92985 503 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 KCNJ16Q9NPI9 418 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 PNO1Q9NRX1 252 aaKnown RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 ACER3Q9NUN7 267 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 LSM7Q9UK45 103 aaKnown RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 SH2B3Q9UQQ2 575 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 GPR89AB7ZAQ6 455 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 K7EPK0 472 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 MAN2B1O00754 1011 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 PRODHO43272 600 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 LCATP04180 440 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 OR8U9P0C7N5 309 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 GPR89BP0CG08 455 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 MDKP21741 143 aaPredicted RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 ODF1Q14990 250 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 IER5LQ5T953 404 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 PRAMEF17Q5VTA0 474 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 AGBL4Q5VU57 503 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 FRG2Q64ET8 278 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 NOXRED1Q6NXP6 359 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 ZNF585AQ6P3V2 769 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 NIPAL3Q6P499 406 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 Q6ZVH6 145 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 KLHDC8AQ8IYD2 350 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 FAM71E2Q8N5Q1 922 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 MFSD9Q8NBP5 474 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 ABHD5Q8WTS1 349 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 FRG2BQ96QU4 278 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 TBL1XR1Q9BZK7 514 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 NELFAQ9H3P2 528 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 A0A1B0GV50 99 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 GCGP01275 180 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 GABRR1P24046 479 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 TSFMP43897 325 aaKnown RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 S100A10P60903 97 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 SELENOWP63302 87 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 SLAQ13239 276 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 LY6G5CQ5SRR4 150 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 LRRC70Q7Z2Q7 622 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 NFKBIDQ8NI38 313 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 C1orf216Q8TAB5 229 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 C16orf58Q96GQ5 468 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 TBX5Q99593 518 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 KLHDC3Q9BQ90 382 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 MYNNQ9NPC7 610 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 SLC2A9Q9NRM0 540 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 TESQ9UGI8 421 aaKnown RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 NOP16Q9Y3C1 178 aaKnown RBP9.79□□□□□ -0.84
CLK3-226ENST00000569406 CCDC88CQ9P219 2028 aa9.79□□□□□ -0.84
CLK3-226ENST00000569406 URB1O60287 2271 aaKnown RBP9.78□□□□□ -0.84
CLK3-226ENST00000569406 LOC105371242A0A075B767 164 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 SLC22A31A6NKX4 558 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 BHLHE40O14503 412 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 ZNF208O43345 1280 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 GCM2O75603 506 aaPredicted RBP9.78□□□□□ -0.84
CLK3-226ENST00000569406 HPRT1P00492 218 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 FAM157CP0CG43 387 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 MPC1LP0DKB6 136 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 RAB1AP62820 205 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 IL10RAQ13651 578 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 RAB35Q15286 201 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 TRIM61Q5EBN2 209 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 ENPP7Q6UWV6 458 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 MEX3DQ86XN8 651 aaKnown RBP9.78□□□□□ -0.84
CLK3-226ENST00000569406 VN1R2Q8NFZ6 395 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 MITD1Q8WV92 249 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 ASB17Q8WXJ9 295 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 PLEKHA2Q9HB19 425 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 NDOR1Q9UHB4 597 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 WDR45Q9Y484 360 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 TRBV4-1A0A0J9YWV2 114 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 VSTM2BA6NLU5 285 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 GRM6O15303 877 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 LRP3O75074 770 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 ATF1P18846 271 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 UBE2V1Q13404 147 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 CSRP2Q16527 193 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 PLEKHS1Q5SXH7 462 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 TRIM40Q6P9F5 258 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 SLC36A1Q7Z2H8 476 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 WDFY1Q8IWB7 410 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 KDM8Q8N371 416 aa9.78□□□□□ -0.84
CLK3-226ENST00000569406 MRPL43Q8N983 215 aaKnown RBP9.78□□□□□ -0.84
CLK3-226ENST00000569406 ST6GALNAC3Q8NDV1 305 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms