RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ATG12O94817 140 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 FARS2O95363 451 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 CD74P04233 296 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 GYPCP04921 128 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 TBC1D3HP0C7X1 549 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ACP5P13686 325 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 HIST1H1CP16403 213 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 GPX2P18283 190 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 PSMA1P25786 263 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 EPHA2P29317 976 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 MNDAP41218 407 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CRYBB2P43320 205 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 HMGCS2P54868 508 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CDH12P55289 794 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 NANOS2P60321 138 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 MRPS34P82930 218 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 SLC18A2Q05940 514 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ST3GAL3Q11203 375 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 TRAF3Q13114 568 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 GPR17Q13304 367 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 UBE2V1Q13404 147 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 SLC10A1Q14973 349 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 PARP15Q460N3 678 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 RFTN2Q52LD8 501 aaPredicted RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 ZNF585BQ52M93 769 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 PYCR3Q53H96 274 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 Q5BKY6 102 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 AKR1C8PQ5T2L2 129 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 LYSMD4Q5XG99 296 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 PMS2CLQ68D20 193 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 GLYATQ6IB77 296 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 TBC1D3CQ6IPX1 549 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CES5AQ6NT32 575 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ANKRD54Q6NXT1 300 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CD200R1LQ6Q8B3 271 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ENPP7Q6UWV6 458 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 UNQ9370/PRO34162Q6UXP9 181 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 C6orf120Q7Z4R8 191 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 LINC01551Q86U37 167 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CCDC190Q86UF4 302 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 NAA40Q86UY6 237 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ZDHHC23Q8IYP9 409 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 TBC1D3Q8IZP1 549 aaPredicted RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 METTL13Q8N6R0 699 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 OR4M1Q8NGD0 313 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 OR10Q1Q8NGQ4 319 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 OR10R2Q8NGX6 335 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 GNPDA2Q8TDQ7 276 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 TBCKQ8TEA7 893 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CYGBQ8WWM9 190 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 RPL3LQ92901 407 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 ROPN1LQ96C74 230 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 WDR34Q96EX3 536 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 MRAP2Q96G30 205 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 SMARCD1Q96GM5 515 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 REEP6Q96HR9 211 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 HSFY1Q96LI6 401 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 GPR137Q96N19 417 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ZNF75AQ96N20 296 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 LINC00052Q96N35 136 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 TGM7Q96PF1 710 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 OR7D2Q96RA2 312 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 SULT4A1Q9BR01 284 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ATG101Q9BSB4 218 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 NUDT9Q9BW91 350 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 MS4A8Q9BY19 250 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 CHST5Q9GZS9 411 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 Q9N2K0 584 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 LHX9Q9NQ69 397 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ASAH2Q9NR71 780 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 RCC2Q9P258 522 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 PEMTQ9UBM1 199 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 VPS29Q9UBQ0 182 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ZNF230Q9UIE0 474 aaPredicted RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 JPT1Q9UK76 154 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 IKZF2Q9UKS7 526 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 C14orf166Q9Y224 244 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 RCE1Q9Y256 329 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 SLC35A3Q9Y2D2 325 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 ATG4BQ9Y4P1 393 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 MTCH2Q9Y6C9 303 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 IQSEC2Q5JU85 1478 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 DICER1Q9UPY3 1922 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 MYH4Q9Y623 1939 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 KDM5AP29375 1690 aaKnown RBP4.48□□□□□ -1.69
VPS35-205ENST00000563984 CUL7Q14999 1698 aa4.48□□□□□ -1.69
VPS35-205ENST00000563984 OVOS2A0A0J9YW53 1432 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 NPHP4O75161 1426 aaPredicted RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 OVOS2Q6IE36 1432 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CDK13Q14004 1512 aaKnown RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 ARAP3Q8WWN8 1544 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 PHIPQ8WWQ0 1821 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 A0A1W2PPM1 405 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 A0A1W2PRD5 423 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CIB4A0PJX0 185 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 GAGE12JA6NER3 117 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SMIM9A6NGZ8 99 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 C21orf140B9A014 251 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 M0R3G1 203 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 UPK1BO75841 260 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms