RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MRPL13Q9BYD1 178 aaKnown RBP11.28□□□□□ -0.6
SHMT2-229ENST00000557348 RNF32Q9H0A6 362 aa11.28□□□□□ -0.6
SHMT2-229ENST00000557348 ZMAT5Q9UDW3 170 aaKnown RBP11.28□□□□□ -0.6
SHMT2-229ENST00000557348 FBXL3Q9UKT7 428 aa11.28□□□□□ -0.6
SHMT2-229ENST00000557348 GPR179Q6PRD1 2367 aa11.28□□□□□ -0.6
SHMT2-229ENST00000557348 SNRPGP15A8MWD9 76 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 SULT1B1O43704 296 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 TRAF3IP2O43734 574 aaPredicted RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 SPARCP09486 303 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 ACSM4P0C7M7 580 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 FTH1P19P0C7X4 201 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 HLA-DOBP13765 273 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 SHC1P29353 583 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 DCTDP32321 178 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 MECP2P51608 486 aaKnown RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 RRADP55042 308 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 H3F3AP84243 136 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 OC90Q02509 493 aaPredicted RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 SLC17A1Q14916 467 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 NHLRC1Q6VVB1 395 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 LSRQ86X29 649 aaPredicted RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 UBE2J2Q8N2K1 259 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 OR2G2Q8NGZ5 317 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 OR52N5Q8NH56 324 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 GPR148Q8TDV2 347 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 RNF128Q8TEB7 428 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 SCARB1Q8WTV0 552 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 ST8SIA4Q92187 359 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 PSMF1Q92530 271 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 INTS12Q96CB8 462 aaKnown RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 GNRHR2Q96P88 292 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 FAM173AQ9BQD7 235 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 UTP23Q9BRU9 249 aaKnown RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 TTTY10Q9BZA0 68 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 ZCCHC4Q9H5U6 513 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 PLEKHA1Q9HB21 404 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 PARD6AQ9NPB6 346 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 IFT46Q9NQC8 304 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 NUDT15Q9NV35 164 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 MRPL22Q9NWU5 206 aaKnown RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 SDHAF2Q9NX18 166 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 CAMK2AQ9UQM7 478 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 COA3Q9Y2R0 106 aaPredicted RBP11.27□□□□□ -0.6
SHMT2-229ENST00000557348 KCNK7Q9Y2U2 307 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 MPDZO75970 2070 aa11.27□□□□□ -0.6
SHMT2-229ENST00000557348 LOC101059948A0A1B0GTJ6 334 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 A0A1W2PNR3 127 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 MPTX1A8MV57 137 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 FAM25EA8MYX2 175 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 GFRA3O60609 400 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 IL5P05113 134 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 PGA4P0DJD7 388 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 PGA3P0DJD8 388 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 CSRP1P21291 193 aaKnown RBP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 ENPP1P22413 925 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 LAP3P28838 519 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 PSMB10P40306 273 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 GUCA1AP43080 201 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 RPS11P62280 158 aaKnown RBP eCLIP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 SCRN3Q0VDG4 424 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 EIF2B1Q14232 305 aaKnown RBP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 OPCMLQ14982 345 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 MEP1BQ16820 701 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 SLC36A2Q495M3 483 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 RGS7BPQ6MZT1 257 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 ESPNLQ6ZVH7 1005 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 MDGA2Q7Z553 956 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 LINC00518Q8N0U6 118 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 PIAS4Q8N2W9 510 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF676Q8N7Q3 588 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 OR11H4Q8NGC9 324 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 OR14L1PQ8NHC6 308 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 NKD1Q969G9 470 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 WBP1Q96G27 269 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 REG4Q9BYZ8 158 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 TMEM185BQ9H7F4 350 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 GPN1Q9HCN4 374 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-229ENST00000557348 PCDHB16Q9NRJ7 776 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 MED29Q9NX70 200 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 LRFN1Q9P244 771 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 KLHDC2Q9Y2U9 406 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 PRELID3BQ9Y3B1 194 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 KCNMB2Q9Y691 235 aa11.27□□□□□ -0.61
SHMT2-229ENST00000557348 CPAMD8Q8IZJ3 1885 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 TRBV5-5A0A0J9YX44 114 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 PROB1E7EW31 1015 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 NPIPA2E9PIF3 369 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 NPIPA3F8WFD2 350 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 AIPO00170 330 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 TSPAN4O14817 238 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 RPP14O95059 124 aaKnown RBP11.26□□□□□ -0.61
SHMT2-229ENST00000557348 ZFPL1O95159 310 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 MPC2O95563 127 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 FGF2P09038 288 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 ITGA3P26006 1051 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 CLDN6P56747 220 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 SCAND1P57086 179 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 RAC3P60763 192 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 GABREP78334 506 aa11.26□□□□□ -0.61
SHMT2-229ENST00000557348 DBPQ10586 325 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms