RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 CHID1Q9BWS9 393 aa11.85□□□□□ -0.51
PTCH1-217ENST00000548420 CADM1Q9BY67 442 aaKnown RBP11.85□□□□□ -0.51
PTCH1-217ENST00000548420 KCNN2Q9H2S1 579 aa11.85□□□□□ -0.51
PTCH1-217ENST00000548420 ZNF69Q9UC07 566 aa11.85□□□□□ -0.51
PTCH1-217ENST00000548420 SLC7A8Q9UHI5 535 aa11.85□□□□□ -0.51
PTCH1-217ENST00000548420 CMAHPQ9Y471 501 aa11.85□□□□□ -0.51
PTCH1-217ENST00000548420 TIMM10BQ9Y5J6 103 aa11.85□□□□□ -0.51
PTCH1-217ENST00000548420 IQCMA0A1B0GVH7 501 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 TCRBV3S1A0A5B6 114 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 CLDN34H7C241 214 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 SELEP16581 610 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 MSR1P21757 451 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 COL8A2P25067 703 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 GUCA1AP43080 201 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-217ENST00000548420 PCBD1P61457 104 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 RELBQ01201 579 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 PLP2Q04941 152 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 KCNMB1Q16558 191 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 TAF9Q16594 264 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 CD300LDQ6UXZ3 194 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 RASSF6Q6ZTQ3 369 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 PAPD5Q8NDF8 572 aaKnown RBP11.84□□□□□ -0.51
PTCH1-217ENST00000548420 OR1J2Q8NGS2 313 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 FANK1Q8TC84 345 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 SLC25A28Q96A46 364 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 ERMAPQ96PL5 475 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-217ENST00000548420 DDOQ99489 341 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 ZNF416Q9BWM5 594 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 DGCR6LQ9BY27 220 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 OR2H1Q9GZK4 316 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 NUAK2Q9H093 628 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 WNT5BQ9H1J7 359 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 SYT4Q9H2B2 425 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 CCNB1IP1Q9NPC3 277 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 GAR1Q9NY12 217 aaKnown RBP11.84□□□□□ -0.51
PTCH1-217ENST00000548420 POMPQ9Y244 141 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 HERC2O95714 4834 aa11.84□□□□□ -0.51
PTCH1-217ENST00000548420 LOC100509620A0A075B734 347 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 DHRS12A0PJE2 317 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 DCTN6O00399 190 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 BHLHE40O14503 412 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 SOCS2O14508 198 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 SLC16A7O60669 478 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 ICMTO60725 284 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 KHDRBS3O75525 346 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 ATP5HO75947 161 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 CCNB2O95067 398 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 PPP1R3DO95685 299 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 CCL2P13500 99 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 ZNF250P15622 560 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 HIST1H1CP16403 213 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 STOMP27105 288 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 UCP2P55851 309 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 RPS23P62266 143 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 LSM6P62312 80 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 GALK2Q01415 458 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 PPP1R8Q12972 351 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 TBC1D28Q2M2D7 210 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 ELFN2Q5R3F8 820 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 ZNF362Q5T0B9 420 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 OLFML2AQ68BL7 652 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 RPL13AP3Q6NVV1 102 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 SPATC1Q76KD6 591 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 GLB1L2Q8IW92 636 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 MRPL37Q9BZE1 423 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 REEP1Q9H902 201 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 AURKAIP1Q9NWT8 199 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 COA3Q9Y2R0 106 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 SAMHD1Q9Y3Z3 626 aaKnown RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 SOX21Q9Y651 276 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-217ENST00000548420 CDH10Q9Y6N8 788 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 RYR1P21817 5038 aa11.83□□□□□ -0.52
PTCH1-217ENST00000548420 IGLV1-36A0A0B4J1U3 117 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 A0A0G2JMP0 313 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 A0A0X1KG70 313 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 A0A1W2PPL8 197 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 ARRDC5A6NEK1 342 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 C12orf71A8MTZ7 269 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 SYNGR3O43761 229 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 MPZL1O95297 269 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 CST1P01037 141 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 COX5BP10606 129 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 CRABP1P29762 137 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 APLNRP35414 380 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 RAD52P43351 418 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 GPR6P46095 362 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-217ENST00000548420 HSF2Q03933 536 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 FLOT2Q14254 428 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 ZBTB46Q86UZ6 589 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 LRP11Q86VZ4 500 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 ALDH16A1Q8IZ83 802 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 OR6V1Q8N148 313 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 NPEPL1Q8NDH3 523 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 OR4M2Q8NGB6 313 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 AKR7LQ8NHP1 331 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 TSSK2Q96PF2 358 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 NMNAT3Q96T66 252 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 IFT27Q9BW83 186 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 BCL2L14Q9BZR8 327 aa11.82□□□□□ -0.52
PTCH1-217ENST00000548420 LRMDAQ9H2I8 198 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms