RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CSNK1G3Q9Y6M4 447 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERCC6Q03468 1493 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NCOA1Q15788 1441 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RIMS2Q9UQ26 1411 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FLT4P35916 1363 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNTNAP1P78357 1384 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MTUS2Q5JR59 1369 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CEMIPQ8WUJ3 1361 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNRQ92752 1358 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLEKHG1Q9ULL1 1385 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PBRM1Q86U86 1689 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF532Q9HCE3 1301 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAV8-7A0A075B6U6 113 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV3OR16-12A0A075B7B8 117 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAV9-2A0A087WT02 112 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAV39A0A0B4J263 110 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A0B4J2A0 478 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV2OR16-5A0A0B4J2B6 119 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A0B4J2E0 115 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV3-20A0A0C4DH32 117 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRBV5-4A0A0C4DH59 114 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DL5BA0A0G2JN68 375 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DL5BA0A0G2JPC4 375 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LOC100131303A0A0U1RQF7 123 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A0U1RQV1 116 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIR2DS1A0A191URI9 304 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMIM28A0A1B0GU29 152 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GV72 72 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GVT2 93 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GX12 115 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GNG14A0A1W2PPG7 69 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PQL4 384 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC5A10A0PJK1 596 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRABD2BA6NFA1 517 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GLTPD2A6NH11 291 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TVP23AA6NH52 213 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARGFXA6NJG6 315 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF233A6NK53 670 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GJE1A6NN92 205 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2AT4A6NND4 320 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C15orf61A6NNL5 157 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DHRS7CA6NNS2 312 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PMS2P5A8MQ11 134 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM166BA8MTA8 275 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2orf74A8MZ97 194 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM220BPB1ANY3 271 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF487B1APH4 448 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMIM1B2RUZ4 78 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 C21orf140B9A014 251 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD63C9JTQ0 380 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD65E5RJM6 399 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 F5H768 121 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NPIPB9F8W1W9 429 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 H0Y980 276 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 H0YJX3 145 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 J3QLI3 93 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 K7EN84 100 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DFFAO00273 331 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNFRSF11BO00300 401 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCRL2O00421 344 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF593O00488 134 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCN1O00602 326 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NTN3O00634 580 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NME4O00746 187 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDX4O14627 284 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDIPTO14735 213 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC9A3R1O14745 358 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBDO15205 165 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 BIRC5O15392 142 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAGEB4O15481 346 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUPL2O15504 423 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FABP7O15540 132 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF749O43361 778 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TGOLN2O43493 480 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAD51CO43502 376 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP8B1O43520 1251 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SSNA1O43805 119 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 IDH3BO43837 385 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FADS1O60427 444 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 STX10O60499 249 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SHOX2O60902 331 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FKBP6O75344 327 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADAP1O75689 374 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCRG1O75711 98 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPX5O75715 221 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 UPK1BO75841 260 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCTN3O75935 186 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC22A5O76082 557 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRP72O76094 671 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 AQP8O94778 261 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNAPINO95295 136 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MPZL1O95297 269 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 LYPLA2O95372 231 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TDP2O95551 362 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP6V1G2O95670 118 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 KRT75O95678 551 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TTC4O95801 387 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TBX6O95947 436 aaPredicted RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 RENP00797 406 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms