RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 DDTP30046 118 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 GJA4P35212 333 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PTGER4P35408 488 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 HHEXQ03014 270 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5M10Q6IEU7 315 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 DHRS4L2Q6PKH6 230 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 LANCL3Q6ZV70 420 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 SCD5Q86SK9 330 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 STPG2Q8N412 459 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PGBD5Q8N414 524 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 CXorf58Q96LI9 332 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR5B2Q96R09 309 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 TAAR9Q96RI9 348 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM59Q9BXS4 323 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ACTR3CQ9C0K3 210 aaPredicted RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 ZMAT3Q9HA38 289 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 FBXO34Q9NWN3 711 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 SLC23A2Q9UGH3 650 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 DIMT1Q9UNQ2 313 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 WNK3Q9BYP7 1800 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A1B0GV90 55 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM269A0A1B0GVZ9 245 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PRAMEF27A3QJZ7 478 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PPM1DO15297 605 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 LDB3O75112 727 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PAPLNO95428 1278 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 CRYABP02511 175 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 RRASP10301 218 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 KCNJ3P48549 501 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR7A5Q15622 319 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 PRAMEF9Q5VWM5 478 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 DPPA3Q6W0C5 159 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 Q6ZSR9 355 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 LRP11Q86VZ4 500 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM25Q86YD3 366 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 CNTN4Q8IWV2 1026 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 FBXL6Q8N531 539 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ZFP62Q8NB50 900 aaPredicted RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2A1Q8NGT9 310 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR9A4Q8NGU2 314 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR52N1Q8NH53 320 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 SPTSSAQ969W0 71 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 SOX7Q9BT81 388 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 SELENOIQ9C0D9 397 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 LINC00597Q9H2U6 94 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 EPHX3Q9H6B9 360 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ELOVL3Q9HB03 270 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 NAT8BQ9UHF3 227 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ADAMTS5Q9UNA0 930 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 VDAC3Q9Y277 283 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 A0A087WV62 115 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR2M5A3KFT3 312 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 ANKRD61A6NGH8 418 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 LEUTXA8MZ59 168 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 KDM4EB2RXH2 506 aaPredicted RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 CSO75390 466 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 GJB3O75712 270 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 RHBDL1O75783 438 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 CPNE6O95741 557 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 BCL6P41182 706 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 VIPR2P41587 438 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 AESQ08117 197 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 RTP2Q5QGT7 225 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 B3GNTL1Q67FW5 361 aaPredicted RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 RNASEKQ6P5S7 137 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 OR14A16Q8NHC5 309 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 SECTM1Q8WVN6 248 aa8□□□□□ -1.13
LIMCH1-218ENST00000513024 MCTS1Q9ULC4 181 aaKnown RBP8□□□□□ -1.13
LIMCH1-218ENST00000513024 CDK2AP1O14519 115 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 F13BP05160 661 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 DUSP1P28562 367 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SOX18P35713 384 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 RAD52P43351 418 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF140P52738 457 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TSPAN31Q12999 210 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CNN3Q15417 329 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 HLA-BQ31612 363 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PRSS45Q7RTY3 260 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CLEC14AQ86T13 490 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 KCNG3Q8TAE7 436 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM40Q8WWA1 233 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 TMEM106AQ96A25 262 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 WDR89Q96FK6 387 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 UBXN10Q96LJ8 280 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 LINC00052Q96N35 136 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 CDCP1Q9H5V8 836 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 HSFX1Q9UBD0 423 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 NSG2Q9Y328 171 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 HCFC2Q9Y5Z7 792 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 WSB1Q9Y6I7 421 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SERTM2A0A1B0GWG4 89 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 ZNF250P15622 560 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 GLB1P16278 677 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PIGPP57054 158 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SIRPAP78324 504 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 GPR18Q14330 331 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PLCXD3Q63HM9 321 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 BTNL3Q6UXE8 466 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 PRSS35Q8N3Z0 413 aa7.99□□□□□ -1.13
LIMCH1-218ENST00000513024 SPEM1Q8N4L4 309 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms