RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CCDC74BQ96LY2 380 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KLHL15Q96M94 604 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR51B6Q9H340 312 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZMAT3Q9HA38 289 aaKnown RBP9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BCL2L10Q9HD36 194 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DKKL1Q9UK85 242 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC35A3Q9Y2D2 325 aa9.73□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 VSTM2BA6NLU5 285 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ADAM10O14672 748 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TCAPO15273 167 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AKR7A3O95154 331 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HSD17B7P56937 341 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CXADRP78310 365 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CYCSP99999 105 aaKnown RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DUSP8Q13202 625 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NHLRC3Q5JS37 347 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KLHL24Q6TFL4 600 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PUSL1Q8N0Z8 303 aaKnown RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FAM71CQ8NEG0 241 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GLYATL2Q8WU03 294 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DVL3Q92997 716 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KTI12Q96EK9 354 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FN3KRPQ9HA64 309 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PLEKHA1Q9HB21 404 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OCIAD1Q9NX40 245 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 KCNE5Q9UJ90 142 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IGHV3-15A0A0B4J1V0 119 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PHOX2AO14813 284 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IGKV1D-16P01601 117 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SERPINA5P05154 406 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZGLP1P0C6A0 271 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AGFG1P52594 562 aaKnown RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTBL2Q562R1 376 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMEM164Q5U3C3 297 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC35F2Q8IXU6 374 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RXFP4Q8TDU9 374 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FAM86C1Q9NVL1 165 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TESQ9UGI8 421 aaKnown RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZIC2O95409 532 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 F12P00748 615 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IFNA21P01568 189 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ERGP11308 486 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SERPINF1P36955 418 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FRKP42685 505 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PRSS12P56730 875 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2B11Q5JQS5 317 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NCMAPQ5T1S8 102 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACOT7LQ6ZUV0 252 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CD163Q86VB7 1156 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CMTM4Q8IZR5 234 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TERB2Q8NHR7 220 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MOGAT1Q96PD6 335 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CMKLR1Q99788 373 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ALG12Q9BV10 488 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RBM24Q9BX46 236 aaKnown RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TSPAN10Q9H1Z9 355 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OPA3Q9H6K4 179 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FGF20Q9NP95 211 aaPredicted RBP9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SERINC1Q9NRX5 453 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FRYLO94915 3013 aa9.72□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MED13LQ71F56 2210 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BORCS7-ASMTA0A0B4J1R7 106 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF736B4DX44 427 aaPredicted RBP9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ABCD4O14678 606 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 POU2F2P09086 479 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LIMS3P0CW19 117 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LIMS4P0CW20 117 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HTR1FP30939 366 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ARFRP1Q13795 201 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GUCA2BQ16661 112 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR52W1Q6IF63 320 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RNF165Q6ZSG1 346 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 BATF2Q8N1L9 274 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 AGBL5Q8NDL9 886 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NT5CQ8TCD5 201 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ORAI3Q9BRQ5 295 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PTGES2Q9H7Z7 377 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CEP295Q9C0D2 2601 aa9.71□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PQLC2LA1A4F0 135 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PYCARD-AS1I3L0S3 204 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DVL2O14641 736 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SBK2P0C263 348 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RNF224P0DH78 156 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CBFBQ13951 182 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HFEQ30201 348 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 WBP2NLQ6ICG8 309 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR10D4PQ8NGN7 298 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MRPS24Q96EL2 167 aaKnown RBP9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EDEM2Q9BV94 578 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MAN2C1Q9NTJ4 1040 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 REV3LO60673 3130 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PKDREJQ9NTG1 2253 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DPM1O60762 260 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FGF2P09038 288 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HSD11B1P28845 292 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PLGLB1Q02325 96 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LTBQ06643 244 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ALKBH1Q13686 389 aaKnown RBP9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 AADACL4Q5VUY2 407 aa9.71□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 YOD1Q5VVQ6 348 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms