RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CCNB1P14635 433 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 MUC1P15941 1255 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CTRB1P17538 263 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 PGAM1P18669 254 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 RAB3BP20337 219 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 OR1E1P30953 314 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 RRM2P31350 389 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CEACAM6P40199 344 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SLC1A2P43004 574 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SLC1A1P43005 524 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CSNK1A1P48729 337 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SLC11A1P49279 550 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 EIF3EP60228 445 aaKnown RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 RPS15AP62244 130 aaKnown RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SPAG1Q07617 926 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 TCP10Q12799 353 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 ERCC8Q13216 396 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 MAB21L1Q13394 359 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 IL18Q14116 193 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 GINS1Q14691 196 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 PON2Q15165 354 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 OR7A5Q15622 319 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 GABRA6Q16445 453 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 UBE2SQ16763 222 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 PTPN20Q4JDL3 420 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CCNJQ5T5M9 372 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 PRR9Q5T870 116 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CEMP1Q6PRD7 247 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 FBXW12Q6X9E4 464 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 FAM122BQ7Z309 247 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 TMCO2Q7Z6W1 182 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 PGAM4Q8N0Y7 254 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF321PQ8N8H1 164 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 LRRC75AQ8NAA5 344 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 BBOF1Q8ND07 529 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 OR9G4Q8NGQ1 327 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 OR2A1Q8NGT9 310 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 OR5W2Q8NH69 310 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 LYPD6BQ8NI32 183 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 KIAA1143Q96AT1 154 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 C8orf44Q96CB5 159 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 RMI2Q96E14 147 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 LINC00477Q96M19 166 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 OSBPL11Q9BXB4 747 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 KRTAP4-1Q9BYQ7 146 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 ACTR3CQ9C0K3 210 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SAV1Q9H4B6 383 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 C8orf33Q9H7E9 229 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 UBE2ZQ9H832 354 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CCNB1IP1Q9NPC3 277 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 HRASLS2Q9NWW9 162 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 LYARQ9NX58 379 aaKnown RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 MTCH1Q9NZJ7 389 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 UVRAGQ9P2Y5 699 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF222Q9UK12 451 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 KCNE3Q9Y6H6 103 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 GPATCH8Q9UKJ3 1502 aaKnown RBP1.34□□□□□ -2.2
CPSF3-205ENST00000489629 MROH7-TTC4A0A0A0MT08 1334 aa1.34□□□□□ -2.2
CPSF3-205ENST00000489629 UBN2Q6ZU65 1347 aa1.34□□□□□ -2.2
CPSF3-205ENST00000489629 COL22A1Q8NFW1 1626 aaPredicted RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 KCNE1BA0A087WTH5 132 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 KBTBD11-OT1A0A1B0GTJ5 212 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF233A6NK53 670 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ZNF99A8MXY4 864 aaPredicted RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CASQ2O14958 399 aaPredicted RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SCAMP2O15127 329 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 NUPL2O15504 423 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 HUS1O60921 280 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 FCN3O75636 299 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 FLOT1O75955 427 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 HLA-DPB1P04440 258 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CT45A6P0DMU7 189 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CT45A5P0DMU8 189 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CT45A7P0DMV0 189 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 OR5H8P0DN80 308 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CSNK2A2P19784 350 aaPredicted RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 F2RP25116 425 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CX3CR1P49238 355 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ESRRGP62508 458 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 RAP1AP62834 184 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SP4Q02446 784 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 SYCNQ0VAF6 134 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 RCAN2Q14206 197 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 PGGHGQ32M88 737 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CT45A1Q5HYN5 189 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 UBE2UQ5VVX9 321 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 TWF2Q6IBS0 349 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ARL9Q6T311 187 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 NTM-AS1Q6ZSK4 140 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CENPQQ7L2Z9 268 aaPredicted RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 TMEM150AQ86TG1 271 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 COMMD1Q8N668 190 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 OR5K2Q8NHB8 316 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 CT45A3Q8NHU0 189 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ABHD3Q8WU67 409 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 MRGPRFQ96AM1 343 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ISG20Q96AZ6 181 aaKnown RBP1.33□□□□□ -2.2
CPSF3-205ENST00000489629 ECHDC3Q96DC8 303 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 GALNT14Q96FL9 552 aa1.33□□□□□ -2.2
CPSF3-205ENST00000489629 PDXPQ96GD0 296 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms