RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 RHOXF2Q9BQY4 288 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 MRPL37Q9BZE1 423 aaKnown RBP1.95□□□□□ -2.1
RFC4-213ENST00000489028 PARP12Q9H0J9 701 aaKnown RBP1.95□□□□□ -2.1
RFC4-213ENST00000489028 LINC00597Q9H2U6 94 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 CDC42EP4Q9H3Q1 356 aaKnown RBP1.95□□□□□ -2.1
RFC4-213ENST00000489028 XKR8Q9H6D3 395 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 TMEM38AQ9H6F2 299 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 BEX1Q9HBH7 125 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 MRM3Q9HC36 420 aaKnown RBP1.95□□□□□ -2.1
RFC4-213ENST00000489028 LHX9Q9NQ69 397 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 AGPAT4Q9NRZ5 378 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 CLN6Q9NWW5 311 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 IFNKQ9P0W0 207 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 COL1A2P08123 1366 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 CEMIPQ8WUJ3 1361 aa1.95□□□□□ -2.1
RFC4-213ENST00000489028 KIF27Q86VH2 1401 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 TRAV6A0A075B6T7 132 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 A0A1B0GUH1 482 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 A0A1B0GW55 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 A0A1W2PPV4 95 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CENPXA8MT69 81 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 KMOO15229 486 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 FLOT1O75955 427 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 AQP8O94778 261 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 TGM6O95932 706 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CSTAP01040 98 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DCNP07585 359 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 CCDC172P0C7W6 258 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4L2P0CJ85 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4L3P0CJ86 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4L5P0CJ88 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4L6P0CJ89 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4L7P0CJ90 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ZNF30P17039 623 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CNR1P21554 472 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 TUBG1P23258 451 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 WARSP23381 471 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 BMI1P35226 326 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 RFC3P40938 356 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CYB561P49447 251 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ETV1P50549 477 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 VSX2P58304 361 aaPredicted RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 UBE2MP61081 183 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 YWHAEP62258 255 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 REG3AQ06141 175 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 PON3Q15166 354 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ZNF726P1Q15940 193 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 GUCA2BQ16661 112 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ZSCAN26Q16670 478 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 TRMT5Q32P41 509 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 HNRNPA1L2Q32P51 320 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 AADACL4Q5VUY2 407 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 GPR107Q5VW38 600 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 FAM71E1Q6IPT2 247 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4L9Q6RFH8 374 aaPredicted RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 IGFL1Q6UW32 110 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 Q6ZR03 302 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ZNF493Q6ZR52 646 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 STRADAQ7RTN6 431 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 MRPL21Q7Z2W9 205 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 FAM122BQ7Z309 247 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CYB561D1Q8N8Q1 229 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 OR56A4Q8NGH8 313 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ACTRT1Q8TDG2 376 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CD300LFQ8TDQ1 290 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 APH1BQ8WW43 257 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CIDECQ96AQ7 238 aaPredicted RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 APH1AQ96BI3 265 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ZNF707Q96C28 371 aaPredicted RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 DNAJC19Q96DA6 116 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ASB9Q96DX5 294 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 SEH1LQ96EE3 360 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 CALN1Q9BXU9 219 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 STMN4Q9H169 189 aaPredicted RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 SLCO1B3Q9NPD5 702 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 TUBG2Q9NRH3 451 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 FAM49BQ9NUQ9 324 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 MCUBQ9NWR8 336 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DUX4Q9UBX2 424 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 OPN4Q9UHM6 478 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 DDX19BQ9UMR2 479 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 ZNF835Q9Y2P0 537 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 RCL1Q9Y2P8 373 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 YARS2Q9Y2Z4 477 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 BZW2Q9Y6E2 419 aaKnown RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 COMMD3-BMI1R4GMX3 469 aa1.94□□□□□ -2.1
RFC4-213ENST00000489028 COL22A1Q8NFW1 1626 aaPredicted RBP1.94□□□□□ -2.1
RFC4-213ENST00000489028 NFASCO94856 1347 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 PCM1Q15154 2024 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 CIB4A0PJX0 185 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 TMEM150BA6NC51 233 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 A6NDN8 102 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 H0YHG0 523 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 NDUFS8O00217 210 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 PLPP1O14494 284 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 SLC9A3R1O14745 358 aaPredicted RBP1.93□□□□□ -2.1
RFC4-213ENST00000489028 SIVA1O15304 175 aa1.93□□□□□ -2.1
RFC4-213ENST00000489028 CDC40O60508 579 aaKnown RBP eCLIP1.93□□□□□ -2.1
RFC4-213ENST00000489028 SCELO95171 688 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms