RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RNF24Q9Y225 148 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 SAMHD1Q9Y3Z3 626 aaKnown RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 ATG4BQ9Y4P1 393 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 KLF2Q9Y5W3 355 aaPredicted RBP4.41□□□□□ -1.7
USP40-213ENST00000483216 SIP14410 1827 aa4.41□□□□□ -1.7
USP40-213ENST00000483216 PTPRFP10586 1907 aa4.4□□□□□ -1.7
USP40-213ENST00000483216 LOC285095A0A1B0GVY8 99 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 FAM168BA1KXE4 195 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 RAB19A4D1S5 217 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 F8W036 122 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 UPK1AO00322 258 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 HLA-DPB1P04440 258 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 FCER2P06734 321 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 HTR1AP08908 422 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 HLA-DPA1P20036 260 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 RPS3P23396 243 aaKnown RBP eCLIP4.4□□□□□ -1.71
USP40-213ENST00000483216 GADD45AP24522 165 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 S100PP25815 95 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 GTF2E2P29084 291 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 AGTR1P30556 359 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 IFNGR2P38484 337 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TGM4P49221 684 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TTPAP49638 278 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 RGS4P49798 205 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TAS2R39P59534 338 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 MRPS10P82664 201 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 SP4Q02446 784 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 FGL1Q08830 312 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 STK11Q15831 433 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 SGCBQ16585 318 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 AANATQ16613 207 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 XKR7Q5GH72 579 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TEX30Q5JUR7 227 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 ANXA8L1Q5VT79 327 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TMEM236Q5W0B7 351 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 FAHD1Q6P587 224 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 PAMR1Q6UXH9 720 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 CASP12Q6UXS9 341 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 RTL4Q6ZR62 310 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 AHSA2Q719I0 299 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 GPR142Q7Z601 462 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 CDH26Q8IXH8 852 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 PDZD9Q8IXQ8 264 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 SLC22A18ASQ8N1D0 253 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 CYP4Z2PQ8N1L4 340 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 ARL6IP6Q8N6S5 226 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 BRSK1Q8TDC3 778 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 ISG20Q96AZ6 181 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 TADA1Q96BN2 335 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TCEAL4Q96EI5 215 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 MRPL48Q96GC5 212 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 CXorf58Q96LI9 332 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 OMDQ99983 421 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 SEC22CQ9BRL7 303 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 ST6GALNAC5Q9BVH7 336 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 SLITRK2Q9H156 845 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 ELOVL6Q9H5J4 265 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 POLE4Q9NR33 117 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.4□□□□□ -1.71
USP40-213ENST00000483216 DNAJC11Q9NVH1 559 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 THUMPD1Q9NXG2 353 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 PDP1Q9P0J1 537 aaPredicted RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 NUFIP1Q9UHK0 495 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 FBXW2Q9UKT8 454 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 TMCC3Q9ULS5 477 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 UBQLN1Q9UMX0 589 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 DUSP12Q9UNI6 340 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 FIS1Q9Y3D6 152 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 KIF25-AS1Q9Y6Z4 181 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 ZNFX1Q9P2E3 1918 aaKnown RBP4.4□□□□□ -1.71
USP40-213ENST00000483216 OTOFQ9HC10 1997 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 PAPPA2Q9BXP8 1791 aa4.4□□□□□ -1.71
USP40-213ENST00000483216 LRRC37A2A6NM11 1700 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 A0A1B0GTQ1 180 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SMIM30A4D0T7 59 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 ZNF98A6NK75 572 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 WASHC1A8K0Z3 465 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SUPT3HB4E1H0 165 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 AIPO00170 330 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 CDC7O00311 574 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SULT1C2O00338 296 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SSX5O60225 188 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 FMO6PO60774 539 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 ENTPD6O75354 484 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 RP2O75695 350 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 CCNB2O95067 398 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 GOT2P00505 430 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 HSMCR30P0CW71 290 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 AZU1P20160 251 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 PRPS1L1P21108 318 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 FCARP24071 287 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 CALCRP30988 508 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 FGF9P31371 208 aaPredicted RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 S100A3P33764 101 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 FAUP35544 74 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 ASMTP46597 345 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SULT1E1P49888 294 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 GDI2P50395 445 aaKnown RBP4.39□□□□□ -1.71
USP40-213ENST00000483216 RAB13P51153 203 aa4.39□□□□□ -1.71
USP40-213ENST00000483216 SNRPGP62308 76 aaKnown RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms