RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 PABPC4LP0CB38 370 aaKnown RBP2.89□□□□□ -1.95
CLK1-209ENST00000472679 DUX4L2P0CJ85 424 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 DUX4L3P0CJ86 424 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 DUX4L5P0CJ88 424 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 DUX4L6P0CJ89 424 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 DUX4L7P0CJ90 424 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 ERGP11308 486 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 CRISP1P54107 249 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 EIF3EP60228 445 aaKnown RBP2.89□□□□□ -1.95
CLK1-209ENST00000472679 SP4Q02446 784 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 UBE2UQ5VVX9 321 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 C22orf42Q6IC83 251 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 ZYG11AQ6WRX3 759 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 SNX20Q7Z614 316 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 C11orf72Q8NBR9 251 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 OR4A4PQ8NGN8 299 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 LILRB4Q8NHJ6 448 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 PHF10Q8WUB8 498 aaKnown RBP2.89□□□□□ -1.95
CLK1-209ENST00000472679 CAPSLQ8WWF8 208 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 TMEM230Q96A57 120 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 ECHDC3Q96DC8 303 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 DUX4Q9UBX2 424 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 MTFP1Q9UDX5 166 aa2.89□□□□□ -1.95
CLK1-209ENST00000472679 IGKV1-8A0A0C4DH67 115 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 SMCO3A2RU48 225 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 SIRPB1O00241 398 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 NVLO15381 856 aaKnown RBP2.88□□□□□ -1.95
CLK1-209ENST00000472679 CHST1O43916 411 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 EIF4E2O60573 245 aaKnown RBP2.88□□□□□ -1.95
CLK1-209ENST00000472679 CIB2O75838 187 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 CDRT1O95170 752 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 CD74P04233 296 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 IL4P05112 153 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 U2AF2P26368 475 aaKnown RBP eCLIP2.88□□□□□ -1.954e-11■■□□□ 13
CLK1-209ENST00000472679 ZNF616Q08AN1 781 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 MPV17L2Q567V2 206 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 RAET1LQ5VY80 246 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 FAM43BQ6ZT52 329 aaPredicted RBP2.88□□□□□ -1.95
CLK1-209ENST00000472679 GATSQ8NAP1 163 aa2.88□□□□□ -1.95
CLK1-209ENST00000472679 HSD17B10Q99714 261 aaKnown RBP2.88□□□□□ -1.95
CLK1-209ENST00000472679 FBXO6Q9NRD1 293 aaPredicted RBP2.88□□□□□ -1.95
CLK1-209ENST00000472679 AHDC1Q5TGY3 1603 aaPredicted RBP2.88□□□□□ -1.95
CLK1-209ENST00000472679 NCBP2LA6PVI3 153 aaKnown RBP2.87□□□□□ -1.95
CLK1-209ENST00000472679 UBXN8O00124 270 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 ARG1P05089 322 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 RRM2P31350 389 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 RAB10P61026 200 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 CRADDP78560 199 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 CDK5Q00535 292 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 TGM3Q08188 693 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 IFT88Q13099 833 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 PIGHQ14442 188 aaPredicted RBP2.87□□□□□ -1.95
CLK1-209ENST00000472679 ALKBH6Q3KRA9 238 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 NPSR1Q6W5P4 371 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 CHST4Q8NCG5 386 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 OR52E2Q8NGJ4 325 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 C17orf50Q8WW18 174 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 ANKRD60Q9BZ19 345 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 RETNQ9HD89 108 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 C8orf17Q9NRJ1 99 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 CCDC59Q9P031 241 aaKnown RBP2.87□□□□□ -1.95
CLK1-209ENST00000472679 PALLDQ8WX93 1383 aa2.87□□□□□ -1.95
CLK1-209ENST00000472679 SCN1AP35498 2009 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 C9JVG2 144 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 LSM1O15116 133 aaKnown RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 SCAMP2O15127 329 aaKnown RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 FLOT1O75955 427 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 FTH1P02794 183 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 CT45A6P0DMU7 189 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 CT45A5P0DMU8 189 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 CT45A7P0DMV0 189 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 RNASE2P10153 161 aaKnown RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 LOXP28300 417 aaPredicted RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 TAS2R31P59538 309 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 HMGN5P82970 282 aaKnown RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 HSP90AB3PQ58FF7 597 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 RNASE13Q5GAN3 156 aaKnown RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 TCEAL5Q5H9L2 206 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 CT45A1Q5HYN5 189 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 ARMC12Q5T9G4 340 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 C12orf54Q6X4T0 127 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 CMC1Q7Z7K0 106 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 CT45A3Q8NHU0 189 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 TCEAL3Q969E4 200 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 SLC38A4Q969I6 547 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 SLC25A46Q96AG3 418 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 ZNF317Q96PQ6 595 aaPredicted RBP2.86□□□□□ -1.95
CLK1-209ENST00000472679 LZTS2Q9BRK4 669 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 SLC17A4Q9Y2C5 497 aa2.86□□□□□ -1.95
CLK1-209ENST00000472679 TRAV19A0A0A6YYK7 116 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 TRBV9A0A0B4J1U6 114 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 TRBV11-1A0A0K0K1C0 115 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 LGALS9O00182 355 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 NDUFAB1O14561 156 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 HLA-DQB1P01920 261 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 ZNF688P0C7X2 276 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 CALRP27797 417 aaKnown RBP2.85□□□□□ -1.95
CLK1-209ENST00000472679 PRRX1P54821 245 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 SYNJ2BPP57105 145 aa2.85□□□□□ -1.95
CLK1-209ENST00000472679 RPS23P62266 143 aaKnown RBP2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms