RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CASQ1P31415 396 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 PPICP45877 212 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 KCNJ11Q14654 390 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 RBBP5Q15291 538 aaKnown RBP3.71□□□□□ -1.82
HMGB1-207ENST00000468384 TRMT5Q32P41 509 aaKnown RBP3.71□□□□□ -1.82
HMGB1-207ENST00000468384 MAJINQ3KP22 176 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 RNASEH2BQ5TBB1 312 aaKnown RBP3.71□□□□□ -1.82
HMGB1-207ENST00000468384 GSG1LQ6UXU4 331 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 ZNF767PQ75MW2 155 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 MDP1Q86V88 176 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 OSR2Q8N2R0 312 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 OR2L5Q8NG80 312 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-207ENST00000468384 TANKQ92844 425 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 HES6Q96HZ4 224 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 NDNQ99608 321 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 TMEM246Q9BRR3 403 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 LRRC1Q9BTT6 524 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 DUSP26Q9BV47 211 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 SLC5A7Q9GZV3 580 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 RPF2Q9H7B2 306 aaKnown RBP3.71□□□□□ -1.82
HMGB1-207ENST00000468384 ZDHHC18Q9NUE0 388 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 MED17Q9NVC6 651 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 NLE1Q9NVX2 485 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-207ENST00000468384 TAS2R3Q9NYW6 316 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 TCF19Q9Y242 345 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 CFL2Q9Y281 166 aa3.71□□□□□ -1.82
HMGB1-207ENST00000468384 SMIM30A4D0T7 59 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 PSMB11A5LHX3 300 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 A6NDX4 124 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 H3BQV1 296 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 J3QR06 171 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 SLC33A1O00400 549 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ST8SIA3O43173 380 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 IFNB1P01574 187 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 SLC35E2BP0CK96 405 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 P0DMU3 169 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 FAM231AP0DMU4 169 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 FAM231CP0DMU5 169 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 KRT4P19013 534 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 S1PR1P21453 382 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 MSNP26038 577 aaKnown RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 STX2P32856 288 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 APOBEC1P41238 236 aaKnown RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 NSFP46459 744 aaKnown RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 REEP5Q00765 189 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 HSPB3Q12988 150 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 KLRD1Q13241 179 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 MELKQ14680 651 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 KIR2DS1Q14954 304 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 RABEP1Q15276 862 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 MOGQ16653 247 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 KLHL38Q2WGJ6 581 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 BOLA3Q53S33 107 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 DUPD1Q68J44 220 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 PTRHD1Q6GMV3 140 aaKnown RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 TMEM182Q6ZP80 229 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 COLCA1Q6ZS62 124 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 SHFQ7M4L6 423 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 MARCH3Q86UD3 253 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ZNF329Q86UD4 541 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 FOXRED2Q8IWF2 684 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ZBED8Q8IZ13 594 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ANKFN1Q8N957 763 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 BOLLQ8N9W6 283 aaKnown RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 UXS1Q8NBZ7 420 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ATP6V1C2Q8NEY4 427 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 EFHD2Q96C19 240 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ORAI1Q96D31 301 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 SPDL1Q96EA4 605 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 PANX3Q96QZ0 392 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 AGPAT1Q99943 283 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 TMEM79Q9BSE2 394 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 TBL1XR1Q9BZK7 514 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 EHD1Q9H4M9 534 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 IARS2Q9NSE4 1012 aaKnown RBP3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ANO10Q9NW15 660 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 VNN3Q9NY84 501 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 FLRT3Q9NZU0 649 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 ANGPTL3Q9Y5C1 460 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 KPTNQ9Y664 436 aa3.7□□□□□ -1.82
HMGB1-207ENST00000468384 OOEPA6NGQ2 149 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 NPIPB8E9PQR5 432 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 TMEM178BH3BS89 294 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 HSPA12AO43301 675 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 RIPK2O43353 540 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 PDYNP01213 254 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 VIMP08670 466 aaKnown RBP3.69□□□□□ -1.82
HMGB1-207ENST00000468384 GNAZP19086 355 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 CCNA2P20248 432 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 ELK4P28324 431 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 HTR5AP47898 357 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 ZNF75DP51815 510 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 DLX1P56177 255 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 SNRPEP62304 92 aaKnown RBP3.69□□□□□ -1.82
HMGB1-207ENST00000468384 CSNK2A1P68400 391 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-207ENST00000468384 MRPS22P82650 360 aaKnown RBP3.69□□□□□ -1.82
HMGB1-207ENST00000468384 MAD2L1Q13257 205 aaPredicted RBP3.69□□□□□ -1.82
HMGB1-207ENST00000468384 UBE2V1Q13404 147 aa3.69□□□□□ -1.82
HMGB1-207ENST00000468384 RBMS2Q15434 407 aaKnown RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms