RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 DECR2Q9NUI1 292 aa13.14□□□□□ -0.31
VARS-219ENST00000461328 TMEM160Q9NX00 188 aa13.14□□□□□ -0.31
VARS-219ENST00000461328 KIF17Q9P2E2 1029 aa13.14□□□□□ -0.31
VARS-219ENST00000461328 LPAR3Q9UBY5 353 aa13.14□□□□□ -0.31
VARS-219ENST00000461328 ATPIF1Q9UII2 106 aa13.14□□□□□ -0.31
VARS-219ENST00000461328 RTTNQ86VV8 2226 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 YLPM1P49750 1951 aaKnown RBP13.13□□□□□ -0.31
VARS-219ENST00000461328 SPRY3O43610 288 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 ICMTO60725 284 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TGFAP01135 160 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 DBHP09172 617 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TACSTD2P09758 323 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 RGS6P49758 472 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TRIP10Q15642 601 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TSTQ16762 297 aaKnown RBP13.13□□□□□ -0.31
VARS-219ENST00000461328 ZMAT1Q5H9K5 638 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 C1orf146Q5VVC0 180 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 CFAP77Q6ZQR2 320 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TMEM179BQ7Z7N9 219 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 HS3ST5Q8IZT8 346 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 ATG16L2Q8NAA4 619 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 OR51L1Q8NGJ5 315 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 OR6K6Q8NGW6 343 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 OTULINQ96BN8 352 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 COG8Q96MW5 612 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 COQ7Q99807 217 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 SHARPINQ9H0F6 387 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 CYSLTR2Q9NS75 346 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TBCCD1Q9NVR7 557 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 DNAJB9Q9UBS3 223 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 KCNG2Q9UJ96 466 aa13.13□□□□□ -0.31
VARS-219ENST00000461328 TVP23AA6NH52 213 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 LILRA1O75019 489 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 DEAF1O75398 565 aaPredicted RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 TIPRLO75663 272 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 CIB2O75838 187 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 GYPBP06028 91 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 FAM157CP0CG43 387 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 ACHEP22303 614 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 COL8A2P25067 703 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 GPR6P46095 362 aaPredicted RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 MRPS11P82912 194 aaKnown RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 SLC18B1Q6NT16 456 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 CD300LDQ6UXZ3 194 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 OR5L1Q8NGL2 311 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 HPS1Q92902 700 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 DCLRE1CQ96SD1 692 aaKnown RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 ATF6BQ99941 703 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 MMADHCQ9H3L0 296 aaPredicted RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 POFUT1Q9H488 388 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 SAP30LQ9HAJ7 183 aa13.12□□□□□ -0.31
VARS-219ENST00000461328 MRPL22Q9NWU5 206 aaKnown RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 CGGBP1Q9UFW8 167 aaPredicted RBP13.12□□□□□ -0.31
VARS-219ENST00000461328 ANK3Q12955 4377 aaKnown RBP13.11□□□□□ -0.31
VARS-219ENST00000461328 ZSCAN5BA6NJL1 495 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 F5H5K5 113 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 PPIHO43447 177 aaKnown RBP13.11□□□□□ -0.31
VARS-219ENST00000461328 CDC14BO60729 498 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 SPARCP09486 303 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 ANXA8P13928 327 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 SPI1P17947 270 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 PAICSP22234 425 aaKnown RBP13.11□□□□□ -0.31
VARS-219ENST00000461328 IGFBP5P24593 272 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 FMO3P31513 532 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 IL2RGP31785 369 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 GRK5P34947 590 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 LIPAP38571 399 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 SLC25A1P53007 311 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 ECH1Q13011 328 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 CCNIQ14094 377 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 SLC27A4Q6P1M0 643 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 LYPD4Q6UWN0 246 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 PAPD5Q8NDF8 572 aaKnown RBP13.11□□□□□ -0.31
VARS-219ENST00000461328 YIPF5Q969M3 257 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 SLCO4A1Q96BD0 722 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 SOX7Q9BT81 388 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 RBM4Q9BWF3 364 aaKnown RBP13.11□□□□□ -0.31
VARS-219ENST00000461328 NARFLQ9H6Q4 476 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 CMC2Q9NRP2 79 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 ZNF275Q9NSD4 429 aaPredicted RBP13.11□□□□□ -0.31
VARS-219ENST00000461328 PTTG3PQ9NZH4 202 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 CYB5R1Q9UHQ9 305 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 STARD10Q9Y365 291 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 COMMD3-BMI1R4GMX3 469 aa13.11□□□□□ -0.31
VARS-219ENST00000461328 J3QW42 95 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 IGHV1-46P01743 117 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 CLUP10909 449 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 OSMP13725 252 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 HNF1AP20823 631 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 PRKACGP22612 351 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 TUBG1P23258 451 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 GGT2P36268 569 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 RPS27P42677 84 aaKnown RBP13.1□□□□□ -0.31
VARS-219ENST00000461328 HIST1H3AP68431 136 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 PSG7Q13046 419 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 TMEM255AQ5JRV8 349 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 FAM209AQ5JX71 171 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 HIST2H3PS2Q5TEC6 136 aa13.1□□□□□ -0.31
VARS-219ENST00000461328 SHQ1Q6PI26 577 aaKnown RBP13.1□□□□□ -0.31
VARS-219ENST00000461328 USP51Q70EK9 711 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms