RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 IL4I1Q96RQ9 567 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 CNN2Q99439 309 aaKnown RBP7.54□□□□□ -1.2
COL28A1-205ENST00000453441 TEAD3Q99594 435 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 ATF6BQ99941 703 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 DHRS9Q9BPW9 319 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 ADI1Q9BV57 179 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 HCAR1Q9BXC0 346 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 C1QTNF6Q9BXI9 259 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 YIPF3Q9GZM5 350 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 WNT5BQ9H1J7 359 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 GSX1Q9H4S2 264 aaPredicted RBP7.54□□□□□ -1.2
COL28A1-205ENST00000453441 PLEKHF2Q9H8W4 249 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 SP140LQ9H930 580 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 MED20Q9H944 212 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 WDR76Q9H967 626 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 ELOVL3Q9HB03 270 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 NOX3Q9HBY0 568 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 DDX28Q9NUL7 540 aaKnown RBP7.54□□□□□ -1.2
COL28A1-205ENST00000453441 MRPL22Q9NWU5 206 aaKnown RBP7.54□□□□□ -1.2
COL28A1-205ENST00000453441 CLN6Q9NWW5 311 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 PCDHGB1Q9Y5G3 927 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 NOTCH2Q04721 2471 aa7.54□□□□□ -1.2
COL28A1-205ENST00000453441 CRYBG3Q68DQ2 2970 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CACNA1DQ01668 2161 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 NAV2Q8IVL1 2488 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 IRGMA1A4Y4 181 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CCDC182A6NF36 153 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 TVP23AA6NH52 213 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 FAM171A2A8MVW0 826 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 ZNF878C9JN71 531 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 ATP6V1G2-DDX39BF2Z307 99 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 DLGAP1O14490 977 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 SYNGR3O43761 229 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 MPZL1O95297 269 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 SCG5P05408 212 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CELA3BP08861 270 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 GSTP1P09211 210 aaKnown RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 PATE4P0C8F1 98 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CLUP10909 449 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 NR4A1P22736 598 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 APOBEC3AP31941 199 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CAPGP40121 348 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 GRB2P62993 217 aaKnown RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 NKX6-1P78426 367 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CCDC92Q53HC0 331 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 AGAP6Q5VW22 663 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CDPF1Q6NVV7 123 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 ZNF774Q6NX45 483 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 KCTD18Q6PI47 426 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 DEGS2Q6QHC5 323 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 PAMR1Q6UXH9 720 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 EGFL6Q8IUX8 553 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 FBXL14Q8N1E6 418 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CPEB3Q8NE35 698 aaKnown RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 KBTBD8Q8NFY9 601 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 OR51L1Q8NGJ5 315 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 OR6N2Q8NGY6 317 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 AKR7LQ8NHP1 331 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 RHOXF1Q8NHV9 184 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 OTOSQ8NHW6 89 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 ASB17Q8WXJ9 295 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 AKAP1Q92667 903 aaKnown RBP eCLIP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 HTRA1Q92743 480 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 PIGTQ969N2 578 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 ZMYND19Q96E35 227 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 POM121L2Q96KW2 1035 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 FOXN4Q96NZ1 517 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 NIPAL2Q9H841 368 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 TBCCD1Q9NVR7 557 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CISD1Q9NZ45 108 aaKnown RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 NKX1-2Q9UD57 310 aaPredicted RBP7.53□□□□□ -1.2
COL28A1-205ENST00000453441 ATP23Q9Y6H3 246 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 CELSR2Q9HCU4 2923 aa7.53□□□□□ -1.2
COL28A1-205ENST00000453441 RAI1Q7Z5J4 1906 aaPredicted RBP7.52□□□□□ -1.2
COL28A1-205ENST00000453441 RTTNQ86VV8 2226 aa7.52□□□□□ -1.2
COL28A1-205ENST00000453441 AKAP6Q13023 2319 aa7.52□□□□□ -1.2
COL28A1-205ENST00000453441 ANKRD17O75179 2603 aaKnown RBP7.52□□□□□ -1.21
COL28A1-205ENST00000453441 C5orf49A4QMS7 147 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 RER1O15258 196 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 ZNF254O75437 659 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 GPANK1O95872 356 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 RAF1P04049 648 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 LYNP07948 512 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 APEX1P27695 318 aaKnown RBP7.52□□□□□ -1.21
COL28A1-205ENST00000453441 CALCRP30988 508 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 DCTDP32321 178 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 ATP6V1E1P36543 226 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 VHLP40337 213 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 MTNR1AP48039 350 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 EVX1P49640 407 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 UCP2P55851 309 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 TPTEP56180 551 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 SELENOVP59797 346 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 ACTC1P68032 377 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 ACTA1P68133 377 aa7.52□□□□□ -1.21
COL28A1-205ENST00000453441 ADARB1P78563 741 aaKnown RBP7.52□□□□□ -1.21
COL28A1-205ENST00000453441 SNTB2Q13425 540 aaKnown RBP7.52□□□□□ -1.21
COL28A1-205ENST00000453441 EIF2B1Q14232 305 aaKnown RBP7.52□□□□□ -1.21
COL28A1-205ENST00000453441 TAF13Q15543 124 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms