RNA–Protein interactions for RNA: ENST00000431429.1

HMGB1P27-201, Transcript of high mobility group box 1 pseudogene 27, humanhuman

BASIC

Gene HMGB1P27, Length 603 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P27-201ENST00000431429 PKNOX2Q96KN3 472 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 CFAP53Q96M91 514 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 TSNARE1Q96NA8 513 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 MRPL37Q9BZE1 423 aaKnown RBP2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 TDRD3Q9H7E2 651 aaKnown RBP2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 CD209Q9NNX6 404 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 LYARQ9NX58 379 aaKnown RBP2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 SLC25A37Q9NYZ2 338 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 SHPKQ9UHJ6 478 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 PSME2Q9UL46 239 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 TBC1D24Q9ULP9 559 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 SLC17A4Q9Y2C5 497 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 MTCH2Q9Y6C9 303 aa2.07□□□□□ -2.08
HMGB1P27-201ENST00000431429 NACAE9PAV3 2078 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 BDP1A6H8Y1 2624 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 KDM3BQ7LBC6 1761 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 SCN11AQ9UI33 1791 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ANKRD31Q8N7Z5 1873 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 GLYATL1P3A0A0U1RQE8 302 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 KBTBD11-OT1A0A1B0GTJ5 212 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 PINLYPA6NC86 204 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 NKX2-6A6NCS4 301 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LRRIQ3A6PVS8 624 aaPredicted RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 DYNC1I1O14576 645 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CASQ2O14958 399 aaPredicted RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 SCAMP2O15127 329 aaKnown RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 DNAJB6O75190 326 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 BGLAPP02818 100 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 SERPINE2P07093 398 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ERCC1P07992 297 aaPredicted RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ZDHHC11BP0C7U3 371 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 HPGDP15428 266 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ZNF30P17039 623 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 EIF2S2P20042 333 aaKnown RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 SLC2A5P22732 501 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CX3CR1P49238 355 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 MRPL19P49406 292 aaKnown RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LHX2P50458 406 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 NCBP2P52298 156 aaKnown RBP eCLIP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CRISP1P54107 249 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CLDN8P56748 225 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 MXD1Q05195 221 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 PON3Q15166 354 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 RSPO1Q2MKA7 263 aaPredicted RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 SOHLH1Q5JUK2 328 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LINC00173Q6ZV60 143 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 H2AFVQ71UI9 128 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CENPQQ7L2Z9 268 aaPredicted RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 COMMD1Q8N668 190 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 EID2Q8N6I1 236 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 PRELID2Q8N945 189 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 PHOSPHO2Q8TCD6 241 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LKAAEAR1Q8TD35 194 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 MCOLN3Q8TDD5 553 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CD300LFQ8TDQ1 290 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 GLYATL2Q8WU03 294 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 RNF138Q8WVD3 245 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 STARD8Q92502 1023 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 PEX13Q92968 403 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ANKRD60Q9BZ19 345 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 NANOGQ9H9S0 305 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LYRM4Q9HD34 91 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ZNF226Q9NYT6 803 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ADAM22Q9P0K1 906 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 NYAP2Q9P242 653 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 RPS6KB2Q9UBS0 482 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 CLN8Q9UBY8 286 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LGALS13Q9UHV8 139 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 GAKO14976 1311 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 LAMA2P24043 3122 aaKnown RBP2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 EYSQ5T1H1 3165 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 SCN7AQ01118 1682 aa2.06□□□□□ -2.08
HMGB1P27-201ENST00000431429 ARFGEF2Q9Y6D5 1785 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 NCOR1O75376 2440 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 ZNF816-ZNF321PA0A0X1KG74 233 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 A0A1B0GTQ1 180 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 NCF1BA6NI72 391 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 LRRIQ4A6NIV6 560 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 NCF1CA8MVU1 366 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 H3BNH8 94 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 HUS1O60921 280 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CLDN11O75508 207 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 SRP72O76094 671 aaKnown RBP2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CLIC3O95833 236 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 OXTP01178 125 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 SERPINA5P05154 406 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 PCCAP05165 728 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CT45A6P0DMU7 189 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CT45A5P0DMU8 189 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CT45A7P0DMV0 189 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 NR2C1P13056 603 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CTRB1P17538 263 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 MDKP21741 143 aaPredicted RBP2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 NBL1P41271 181 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CDKN1BP46527 198 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 CLDN18P56856 261 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 ACTA2P62736 377 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 ACTG2P63267 376 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 ACTC1P68032 377 aa2.05□□□□□ -2.08
HMGB1P27-201ENST00000431429 ACTA1P68133 377 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms