RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KCTD8Q6ZWB6 473 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 RHOUQ7L0Q8 258 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 SPTSSAQ969W0 71 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 COQ7Q99807 217 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 MRPS26Q9BYN8 205 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 ACOT13Q9NPJ3 140 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 NDRG3Q9UGV2 375 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 FBXL3Q9UKT7 428 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 SMG1Q96Q15 3661 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 LCKP06239 509 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 PLA2G2AP14555 144 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 CCNOP22674 350 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 PAX7P23759 505 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 GRNP28799 593 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 GDI2P50395 445 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 ZNF83P51522 516 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 GBX2P52951 348 aaPredicted RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 SPHARQ15513 63 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 NEDD8Q15843 81 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 ZNF684Q5T5D7 378 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 C1QTNF12Q5T7M4 302 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 LIPNQ5VXI9 398 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 KLBQ86Z14 1044 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 WFDC8Q8IUA0 241 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 ZNF283Q8N7M2 679 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 CPEB3Q8NE35 698 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 SLC7A6Q92536 515 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 OR5M11Q96RB7 305 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 KCNJ15Q99712 375 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 NIPAL2Q9H841 368 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 MOV10Q9HCE1 1003 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 DDX28Q9NUL7 540 aaKnown RBP15.73■□□□□ 0.11
SDC1-203ENST00000403076 ACOXLQ9NUZ1 547 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 SCOCQ9UIL1 159 aa15.73■□□□□ 0.11
SDC1-203ENST00000403076 OR6C6A6NF89 314 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 SERPINA5P05154 406 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 HSMCR30P0CW71 290 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 SMIM18P0DKX4 95 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 COX5BP10606 129 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 STOMP27105 288 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 PSMB10P40306 273 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 SLC6A9P48067 706 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 SNTB1Q13884 538 aaKnown RBP15.72■□□□□ 0.11
SDC1-203ENST00000403076 SSX8Q7RTT4 187 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 EGFL6Q8IUX8 553 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 RORBQ92753 470 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 MS4A3Q96HJ5 214 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 WFIKKN1Q96NZ8 548 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 BABAM2Q9NXR7 383 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 GTF2A1LQ9UNN4 478 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 N6AMT1Q9Y5N5 214 aa15.72■□□□□ 0.11
SDC1-203ENST00000403076 TRIM64CA6NLI5 447 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 M0R1B8 84 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 CLPTM1O96005 669 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 APOC1P02654 83 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 CELA3BP08861 270 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 DBHP09172 617 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 PCMT1P22061 227 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 TPTEP56180 551 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 SORDQ00796 357 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 TFF3Q07654 80 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 ZNF829Q3KNS6 432 aaPredicted RBP15.71■□□□□ 0.11
SDC1-203ENST00000403076 ZNF367Q7RTV3 350 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 SLC30A7Q8NEW0 376 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 OR1J2Q8NGS2 313 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 LINC01560Q8TB33 94 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 FCGR1BQ92637 280 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 PELI1Q96FA3 418 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 BRD7Q9NPI1 651 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 TRIM36Q9NQ86 728 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 ATPIF1Q9UII2 106 aa15.71■□□□□ 0.11
SDC1-203ENST00000403076 C5orf49A4QMS7 147 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 TUBAL3A6NHL2 446 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 M0R135 149 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 ABHD16AO95870 558 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 IGKV3-15P01624 115 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 CCL2P13500 99 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 PSMB9P28065 219 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 CX3CR1P49238 355 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 MRPL28Q13084 256 aaKnown RBP15.7■□□□□ 0.1
SDC1-203ENST00000403076 TBC1D28Q2M2D7 210 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 C22orf34Q6ZV56 151 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 ZNF584Q8IVC4 421 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 FAM169BQ8N8A8 192 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 ZNF799Q96GE5 643 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 ZNF75AQ96N20 296 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 CDH20Q9HBT6 801 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 NGBQ9NPG2 151 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 LSM2Q9Y333 95 aaKnown RBP15.7■□□□□ 0.1
SDC1-203ENST00000403076 GRIP1Q9Y3R0 1128 aa15.7■□□□□ 0.1
SDC1-203ENST00000403076 SPTBN1Q01082 2364 aaKnown RBP15.7■□□□□ 0.1
SDC1-203ENST00000403076 LOC100509620A0A075B734 347 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 TMEM269A0A1B0GVZ9 245 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 ANXA2P07355 339 aaKnown RBP15.69■□□□□ 0.1
SDC1-203ENST00000403076 ZNF14P17017 642 aaPredicted RBP15.69■□□□□ 0.1
SDC1-203ENST00000403076 CRYGSP22914 178 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 DCTDP32321 178 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 UBE2UQ5VVX9 321 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 ZNF544Q6NX49 715 aa15.69■□□□□ 0.1
SDC1-203ENST00000403076 HAVCR2Q8TDQ0 301 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms