RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 OR51F2Q8NH61 342 aa12.79□□□□□ -0.36
COL4A3-202ENST00000396578 FER1L6-AS2Q96M78 137 aa12.79□□□□□ -0.36
COL4A3-202ENST00000396578 SLC23A1Q9UHI7 598 aa12.79□□□□□ -0.36
COL4A3-202ENST00000396578 POLDIP2Q9Y2S7 368 aa12.79□□□□□ -0.36
COL4A3-202ENST00000396578 LOC102723971A0A1B0GUV8 181 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 CLDN20P56880 219 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 SCN2AQ99250 2005 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 TCN2P20062 427 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 HOXD9P28356 352 aaPredicted RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 ERVFC1-1P60608 527 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 TSEN54Q7Z6J9 526 aaKnown RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 CLRN3Q8NCR9 226 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 OLIG1Q8TAK6 271 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 PARD6AQ9NPB6 346 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 SLCO1B1Q9Y6L6 691 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 ACOT8O14734 319 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 AGBL4Q5VU57 503 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 FBXW5Q969U6 566 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 DCBLD2Q96PD2 775 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 CSF3RQ99062 836 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 LANCL2Q9NS86 450 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 YKT6O15498 198 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 YIF1AO95070 293 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 MMP11P24347 488 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 HRH1P35367 487 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 APOBEC1P41238 236 aaKnown RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 UBE2FQ969M7 185 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 KIAA1217Q5T5P2 1943 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 KNL1Q8NG31 2342 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 RP1L1Q8IWN7 2480 aaPredicted RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 A0A1B0GUH1 482 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 CNMDO75829 334 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 FCRL6Q6DN72 434 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 TMEM178AQ8NBL3 297 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 OR2A14Q96R47 310 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 IKZF5Q9H5V7 419 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 LAMP3Q9UQV4 416 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 THEM4Q5T1C6 240 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 MAVSQ7Z434 540 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 MARCH3Q86UD3 253 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 DTWD2Q8NBA8 298 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 ZFPM2Q8WW38 1151 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 TEAD3Q99594 435 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 PDLIM7Q9NR12 457 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 MAST2Q6P0Q8 1798 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 EN2P19622 333 aaPredicted RBP12.78□□□□□ -0.36
COL4A3-202ENST00000396578 DGCR2P98153 550 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 ADAMTSL4Q6UY14 1074 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 GABRG1Q8N1C3 465 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 ZNF680Q8NEM1 530 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 RXFP4Q8TDU9 374 aa12.78□□□□□ -0.36
COL4A3-202ENST00000396578 GALR2O43603 387 aaPredicted RBP12.77□□□□□ -0.36
COL4A3-202ENST00000396578 MRPS21P82921 87 aaKnown RBP12.77□□□□□ -0.36
COL4A3-202ENST00000396578 EXOSC2Q13868 293 aaKnown RBP12.77□□□□□ -0.36
COL4A3-202ENST00000396578 UBAC2Q8NBM4 344 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 TRAV20A0A0B4J274 112 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 A0A1W2PPQ1 181 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 TAPBPO15533 448 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 SMIM18P0DKX4 95 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 CD1CP29017 333 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 CXCL12P48061 93 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 OXA1LQ15070 435 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 ZNF528Q3MIS6 628 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 C9orf152Q5JTZ5 239 aa12.77□□□□□ -0.36
COL4A3-202ENST00000396578 MAML2Q8IZL2 1156 aaPredicted RBP12.77□□□□□ -0.36
COL4A3-202ENST00000396578 LYRM2Q9NU23 88 aaPredicted RBP12.77□□□□□ -0.36
COL4A3-202ENST00000396578 LOC107986453A0A1B0GWG9 222 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 TMEM189-UBE2V1I3L0A0 370 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 RAB7AP51149 207 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 EXT1Q16394 746 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 UQCC3Q6UW78 93 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 ANKRD53Q8N9V6 530 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 Q96M85 177 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 OPALINQ96PE5 141 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 CSNK1G1Q9HCP0 422 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 GPR173Q9NS66 373 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 OR4E1P0C645 316 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 FGF7P21781 194 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 GPX8Q8TED1 209 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 TRIB1Q96RU8 372 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 PTDSS2Q9BVG9 487 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 COL2A1P02458 1487 aaPredicted RBP12.77□□□□□ -0.37
COL4A3-202ENST00000396578 CD37P11049 281 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 LYRM4Q9HD34 91 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 PSENENQ9NZ42 101 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 KLRC4-KLRK1H3BQV0 150 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 CDC20Q12834 499 aa12.77□□□□□ -0.37
COL4A3-202ENST00000396578 LRP3O75074 770 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 DRAM2Q6UX65 266 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 PELI3Q8N2H9 469 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 GPR32P1Q8NGA4 272 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 FGF13Q92913 245 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 CXorf58Q96LI9 332 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 NDRG4Q9ULP0 352 aaKnown RBP12.76□□□□□ -0.37
COL4A3-202ENST00000396578 NCBP2LA6PVI3 153 aaKnown RBP12.76□□□□□ -0.37
COL4A3-202ENST00000396578 AANATQ16613 207 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 KHDC1LQ5JSQ8 128 aa12.76□□□□□ -0.37
COL4A3-202ENST00000396578 SLC25A43Q8WUT9 341 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms