RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LRRC18Q8N456 261 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 ZIC4Q8N9L1 334 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 OR51E1Q8TCB6 317 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 FCAMRQ8WWV6 532 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 RAB40AQ8WXH6 277 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 ADAT3Q96EY9 351 aaPredicted RBP13.34□□□□□ -0.27
GPC3-202ENST00000394299 MS4A3Q96HJ5 214 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 TMEM41AQ96HV5 264 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 ZPBPQ9BS86 351 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 DDA1Q9BW61 102 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 ZNF416Q9BWM5 594 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 HES7Q9BYE0 225 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 DPAGT1Q9H3H5 408 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 HRASLSQ9HDD0 168 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 PLSCR3Q9NRY6 295 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 CENPXA8MT69 81 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 E9PLN8 166 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 GABARAPH6UMI1 98 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 SLC17A2O00624 439 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 KRT33AO76009 404 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 ISG15P05161 165 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 SERPINA7P05543 415 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 GABREP78334 506 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 SF3B4Q15427 424 aaKnown RBP eCLIP13.34□□□□□ -0.277e-8■■■□□ 15.2
GPC3-202ENST00000394299 KLHL24Q6TFL4 600 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 BAIAP2L2Q6UXY1 529 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 LUZP2Q86TE4 346 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 JAGN1Q8N5M9 183 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 ROBO4Q8WZ75 1007 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 OR2M2Q96R28 347 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 PIGQQ9BRB3 760 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 PNRC2Q9NPJ4 139 aaKnown RBP13.34□□□□□ -0.27
GPC3-202ENST00000394299 ETV7Q9Y603 341 aa13.34□□□□□ -0.27
GPC3-202ENST00000394299 CFAP47Q6ZTR5 3102 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 LOC102725191A0A1B0GVB3 256 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 NPIPA2E9PIF3 369 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 NPIPA3F8WFD2 350 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 GLSO94925 669 aaPredicted RBP13.33□□□□□ -0.28
GPC3-202ENST00000394299 ACHEP22303 614 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 GNALP38405 381 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 CYB561P49447 251 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 TAF13Q15543 124 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 HES3Q5TGS1 186 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 ZNF704Q6ZNC4 412 aaPredicted RBP13.33□□□□□ -0.28
GPC3-202ENST00000394299 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.33□□□□□ -0.28
GPC3-202ENST00000394299 OR9K2Q8NGE7 335 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 LIN37Q96GY3 246 aaPredicted RBP13.33□□□□□ -0.28
GPC3-202ENST00000394299 SIGLEC12Q96PQ1 595 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 RBM24Q9BX46 236 aaKnown RBP13.33□□□□□ -0.28
GPC3-202ENST00000394299 PLA2G3Q9NZ20 509 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 CKLFQ9UBR5 152 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 ELF5Q9UKW6 265 aaPredicted RBP13.33□□□□□ -0.28
GPC3-202ENST00000394299 MED13Q9UHV7 2174 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 ZFHX4Q86UP3 3567 aa13.33□□□□□ -0.28
GPC3-202ENST00000394299 TRAV18A0A075B6X5 111 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 SMAD9O15198 467 aaKnown RBP13.32□□□□□ -0.28
GPC3-202ENST00000394299 FKBP2P26885 142 aaKnown RBP13.32□□□□□ -0.28
GPC3-202ENST00000394299 HTR2CP28335 458 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 HSD11B1P28845 292 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 CD96P40200 585 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 CSNK1A1P48729 337 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 CLDN15P56746 228 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 GFOD2Q3B7J2 385 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 TMEM244Q5VVB8 128 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 HACD4Q5VWC8 232 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 ELMOD2Q8IZ81 293 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 OR4D6Q8NGJ1 314 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 OR1J2Q8NGS2 313 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 RNF170Q96K19 258 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 SPACA5Q96QH8 159 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 ZMAT3Q9HA38 289 aaKnown RBP13.32□□□□□ -0.28
GPC3-202ENST00000394299 ZNF275Q9NSD4 429 aaPredicted RBP13.32□□□□□ -0.28
GPC3-202ENST00000394299 XRCC3O43542 346 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 SYT7O43581 403 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 TRAPPC2P0DI81 140 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 TRAPPC2BP0DI82 140 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 ABOP16442 354 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 ZNF121P58317 390 aaPredicted RBP13.32□□□□□ -0.28
GPC3-202ENST00000394299 RRAS2P62070 204 aaPredicted RBP13.32□□□□□ -0.28
GPC3-202ENST00000394299 ANKRD16Q6P6B7 361 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 MRI1Q9BV20 369 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 ATG5Q9H1Y0 275 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 LRFN1Q9P244 771 aa13.32□□□□□ -0.28
GPC3-202ENST00000394299 LOC100289279A0A1B0GTE1 492 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 A0A1B0GTI1 187 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 CIB4A0PJX0 185 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 OR5H15A6NDH6 313 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 ZNF878C9JN71 531 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 CXCL13O43927 109 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 TNFSF15O95150 251 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 SRD5A2P31213 254 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 FCN2Q15485 313 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 GLT8D1Q68CQ7 371 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 GGNQ86UU5 652 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 DTX1Q86Y01 620 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 OR52N4Q8NGI2 321 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 PLEKHA1Q9HB21 404 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 SLC5A6Q9Y289 635 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 CCDC187A0A096LP49 1063 aa13.31□□□□□ -0.28
GPC3-202ENST00000394299 GGT3PA6NGU5 568 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms